chr3 : 169,246,276 – 169,246,645
369 bp 37 TFs 0 linked genes
This 369 bp open chromatin element has no linked target genes and is bound by 37 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:169,241,276 – 169,251,645
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
37 transcription factors
Source
Cell type
AR 4 datasets
ChIP LNCaP_SHGATA2_ETOH GSE69043.AR.LNCaP_SHGATA2_ETOH 109 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 168 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 140 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 174 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 152 bp overlap
CBFA2T3 1 dataset
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 202 bp overlap
CDK9 2 datasets
ChIP MOLT-4_DMSO GSE79288.CDK9.MOLT-4_DMSO 214 bp overlap
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 201 bp overlap
CTBP2 1 dataset
ChIP MCF-7 GSE107013.CTBP2.MCF-7 124 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 306 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 367 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 137 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 173 bp overlap
ESR1 18 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 200 bp overlap
ChIP MCF-7 GSE45822.ESR1.MCF-7 135 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 177 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 168 bp overlap
ChIP MCF-7_AZD2014 GSE103023.ESR1.MCF-7_AZD2014 161 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 177 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 237 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 187 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 241 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 120 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 238 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 198 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 151 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 243 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 251 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 201 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 268 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 206 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_E2_talen GSE94493.ESR1_Y537N.MCF-7_E2_talen 146 bp overlap
ChIP MCF-7_talen GSE94493.ESR1_Y537N.MCF-7_talen 164 bp overlap
ESR1_Y537S 2 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 217 bp overlap
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 227 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 125 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 369 bp overlap
FOXA1 7 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 263 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 196 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 158 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 148 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 181 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 183 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 225 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 234 bp overlap
ChIP DE DE-FOXA2-1 369 bp overlap
ChIP DE DE-FOXA2-2 369 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 184 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 164 bp overlap
GATA2 6 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 178 bp overlap
ChIP SK-N-SH ENCFF764OZD 356 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 170 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 206 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 140 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 212 bp overlap
GATA3 11 datasets
ChIP Jurkat GSE76181.GATA3.Jurkat 269 bp overlap
ChIP Jurkat GSE68976.GATA3.Jurkat 236 bp overlap
ChIP MCF-7 ENCFF437NQS 291 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 297 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 277 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 282 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 228 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 158 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 151 bp overlap
ChIP MCF-7_ICI GSE81510.GATA3.MCF-7_ICI 165 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 210 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 232 bp overlap
ChIP DE DE-GATA4-1 369 bp overlap
ChIP DE DE-GATA4-2 369 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 285 bp overlap
ChIP foregut GSE117136.GATA4.foregut 369 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 300 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 333 bp overlap
GATA6 12 datasets
ChIP AGS GSE51705.GATA6.AGS 106 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 215 bp overlap
ChIP DE DE-GATA6-1 357 bp overlap
ChIP DE DE-GATA6-2 369 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 241 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 303 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 328 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 235 bp overlap
ChIP foregut GSE117136.GATA6.foregut 289 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 207 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 265 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 282 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 104 bp overlap
JUN 1 dataset
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 166 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 225 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 147 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 175 bp overlap
MYB 4 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 236 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 260 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 165 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 234 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 121 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 277 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 350 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 212 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 364 bp overlap
ChIP HEK293 ENCFF145WQQ 327 bp overlap
RUNX2 1 dataset
ChIP PER-117 GSE151819.RUNX2.PER-117 250 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 285 bp overlap
SMARCA4 1 dataset
ChIP NGP GSE134626.SMARCA4.NGP 193 bp overlap
TAL1 4 datasets
ChIP Jurkat GSE29180.TAL1.Jurkat 182 bp overlap
ChIP K-562 GSE107726.TAL1.K-562 179 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 178 bp overlap
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 306 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 204 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 288 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 258 bp overlap
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