chr3 : 157,162,679 157,163,081
402 bp 25 TFs 1 linked gene
This 402 bp open chromatin element is linked to CCNL1 and is bound by 25 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CCNL1 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:157,157,679 – 157,168,081
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
25 transcription factors
Source
Cell type
CBX3 2 datasets
ChIP HCT116 ENCFF947BOL 289 bp overlap
ChIP HCT116 ENCFF947BOL 322 bp overlap
CTCF 192 datasets
ChIP 22Rv1 ENCFF466OXN 290 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 250 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 185 bp overlap
ChIP A549 ENCFF034FVO 294 bp overlap
ChIP A549 ENCFF182TCQ 217 bp overlap
ChIP A549 ENCFF434LUY 236 bp overlap
ChIP AG04449 ENCFF248MBD 181 bp overlap
ChIP AG10803 ENCFF549AQK 234 bp overlap
ChIP B cell ENCFF506FKC 294 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 68 bp overlap
ChIP BE2C ENCFF757SRF 284 bp overlap
ChIP BJ ENCFF434HEC 278 bp overlap
ChIP C4-2B ENCFF821XVN 339 bp overlap
ChIP Calu3 ENCFF526MDS 333 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_24h DE_24h-CTCF_MA0139.2 15 bp overlap
Motif DE_24h DE_24h-CTCF_MA1930.2 33 bp overlap
ChIP DND-41 ENCFF913MRA 234 bp overlap
ChIP DOHH2 ENCFF637WNW 402 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 195 bp overlap
ChIP GM06990 ENCFF471OQT 268 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 164 bp overlap
ChIP GM10248 ENCFF083HVS 165 bp overlap
ChIP GM10248 ENCFF226VLZ 165 bp overlap
ChIP GM10266 ENCFF241YYF 177 bp overlap
ChIP GM12864 ENCFF357DQE 278 bp overlap
ChIP GM12865 ENCFF067GFI 234 bp overlap
ChIP GM12872 ENCFF697BYI 285 bp overlap
ChIP GM12873 ENCFF711LOS 128 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 112 bp overlap
ChIP GM12875 ENCFF081UCQ 257 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 102 bp overlap
ChIP GM12878 ENCFF217EAX 287 bp overlap
ChIP GM12878 ENCFF485TGR 251 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCFF635MMB 217 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM23338 ENCFF531QOI 262 bp overlap
ChIP GM23338 ENCFF772DML 194 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 149 bp overlap
ChIP H9 ENCFF152GTF 303 bp overlap
ChIP H9 ENCFF152GTF 311 bp overlap
ChIP HCT116 ENCFF003KHP 352 bp overlap
ChIP HCT116 ENCFF209YMI 279 bp overlap
ChIP HFFc6 ENCFF005CJI 298 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 348 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCFF626XQK 251 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 181 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 122 bp overlap
ChIP HepG2 ENCFF127KUP 223 bp overlap
ChIP HepG2 ENCFF194VBQ 137 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 196 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 165 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 271 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 148 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 402 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 199 bp overlap
ChIP K562 ENCFF082GOI 96 bp overlap
ChIP K562 ENCFF111MGE 95 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP K562 ENCFF430KTH 197 bp overlap
ChIP K562 ENCFF598YSU 95 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 172 bp overlap
ChIP KMS-11 ENCFF853JKX 402 bp overlap
ChIP LNCAP ENCFF223HIG 395 bp overlap
ChIP LNCAP ENCFF700QXT 393 bp overlap
ChIP Loucy ENCFF359TVQ 207 bp overlap
ChIP Loucy ENCFF359TVQ 266 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 83 bp overlap
ChIP MCF-7 ENCFF139NQI 236 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF210JUZ 352 bp overlap
ChIP MCF-7 ENCFF414SZG 97 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 81 bp overlap
ChIP MCF-7 ENCFF844STM 102 bp overlap
ChIP MCF-7 ENCFF954TUV 97 bp overlap
ChIP MM.1S ENCFF869JMQ 226 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 173 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 154 bp overlap
ChIP NB4 ENCFF155DNY 251 bp overlap
ChIP NCI-H929 ENCFF305JAB 147 bp overlap
ChIP OCI-LY1 ENCFF455ESK 167 bp overlap
ChIP OCI-LY1 ENCFF455ESK 286 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 190 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 254 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 377 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 191 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 169 bp overlap
ChIP Panc1 ENCFF056JQX 402 bp overlap
ChIP Peyer's patch ENCFF701KWW 322 bp overlap
ChIP Peyer's patch ENCFF742AQK 360 bp overlap
ChIP Peyer's patch ENCFF746TCR 155 bp overlap
ChIP Peyer's patch ENCFF828IDE 296 bp overlap
ChIP SK-N-SH ENCFF731NJX 238 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 191 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 402 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 125 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 149 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WI38 ENCFF841AXJ 312 bp overlap
ChIP WTC11 ENCFF658QVH 367 bp overlap
ChIP WTC11 ENCFF658QVH 277 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 402 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 402 bp overlap
ChIP adrenal gland ENCFF678WUB 285 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 329 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 198 bp overlap
ChIP body of pancreas ENCFF021LNP 357 bp overlap
ChIP body of pancreas ENCFF128ALM 362 bp overlap
ChIP body of pancreas ENCFF269EDN 192 bp overlap
ChIP body of pancreas ENCFF438KTE 246 bp overlap
ChIP body of pancreas ENCFF756FGB 345 bp overlap
ChIP body of pancreas ENCFF798MEO 187 bp overlap
ChIP body of pancreas ENCFF881RGF 71 bp overlap
ChIP brain ENCFF163BBN 402 bp overlap
ChIP brain ENCFF685VRG 402 bp overlap
ChIP brain ENCFF685VRG 395 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 281 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 271 bp overlap
ChIP cardiac fibroblast ENCFF326EDY 209 bp overlap
ChIP cardiac muscle cell ENCFF728JSA 291 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 174 bp overlap
ChIP chondrocyte ENCFF134ORZ 146 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 99 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 140 bp overlap
ChIP endodermal cell ENCFF471YCZ 302 bp overlap
ChIP endodermal cell ENCFF471YCZ 313 bp overlap
ChIP endothelial cell ENCFF663LIE 402 bp overlap
ChIP endothelial cell of umbilical vein ENCFF455OQM 197 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 261 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ALA.CTCF.endothelial_umbilical-vein 148 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 305 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 270 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 303 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 276 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 261 bp overlap
ChIP fibroblast of mammary gland ENCFF109AZU 246 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 259 bp overlap
ChIP fibroblast of the aortic adventitia ENCFF639DMR 217 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 271 bp overlap
ChIP foreskin fibroblast ENCFF219EBQ 307 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 161 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 402 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 82 bp overlap
ChIP heart left ventricle ENCFF440XFJ 167 bp overlap
ChIP heart left ventricle ENCFF440XFJ 387 bp overlap
ChIP heart right ventricle ENCFF767XJQ 353 bp overlap
ChIP hepatocyte ENCFF263BLJ 329 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 106 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP kidney ENCFF335EKK 185 bp overlap
ChIP left lung ENCFF620MAT 311 bp overlap
ChIP liver ENCFF895ERR 238 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 139 bp overlap
ChIP nephron ENCFF411ACD 402 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 385 bp overlap
ChIP neural crest cell ENCFF182LWK 167 bp overlap
ChIP neural progenitor cell ENCFF420RBO 260 bp overlap
ChIP neural progenitor cell ENCFF581WPG 386 bp overlap
ChIP osteoblast ENCFF491ZJZ 345 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 163 bp overlap
ChIP osteocyte ENCFF929FPD 365 bp overlap
ChIP pancreas ENCFF101CZV 181 bp overlap
ChIP pancreas ENCFF315CUI 314 bp overlap
ChIP pancreas ENCFF372XNU 359 bp overlap
ChIP placenta ENCFF029PHY 337 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 217 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 247 bp overlap
ChIP right lobe of liver ENCFF011NDG 229 bp overlap
ChIP right lobe of liver ENCFF250KSY 334 bp overlap
ChIP right lobe of liver ENCFF523SCB 142 bp overlap
ChIP right lobe of liver ENCFF956UTA 315 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 289 bp overlap
ChIP smooth muscle cell ENCFF656FBT 304 bp overlap
ChIP spleen ENCFF065CBS 402 bp overlap
ChIP spleen ENCFF326DUY 306 bp overlap
ChIP spleen ENCFF520HPZ 293 bp overlap
ChIP thyroid gland ENCFF163TUI 313 bp overlap
ChIP thyroid gland ENCFF204HWS 279 bp overlap
ChIP thyroid gland ENCFF300RYK 372 bp overlap
ChIP transverse colon ENCFF653EYS 315 bp overlap
ChIP transverse colon ENCFF749DPF 372 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 246 bp overlap
ChIP upper lobe of left lung ENCFF277NLT 326 bp overlap
ChIP upper lobe of left lung ENCFF374MAK 296 bp overlap
ESRRA 2 datasets
Motif DE_12h DE_12h-ESRRA_MA0592.4 9 bp overlap
Motif ES_0h ES_0h-ESRRA_MA0592.4 9 bp overlap
ESRRB 2 datasets
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
Motif ES_0h ES_0h-ESRRB_MA0141.4 10 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
HNRNPL 1 dataset
ChIP HepG2 ENCFF671UYF 402 bp overlap
NR5A1 1 dataset
Motif ES_0h ES_0h-NR5A1_MA1540.3 12 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 105 bp overlap
Nr5A2 2 datasets
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
Motif ES_0h ES_0h-Nr5A2_MA0505.3 9 bp overlap
RAD21 12 datasets
ChIP A549 ENCFF047SFC 251 bp overlap
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
ChIP HepG2 ENCFF963UBJ 257 bp overlap
ChIP K562 ENCFF169SQI 171 bp overlap
ChIP MCF-7 ENCFF694KOM 324 bp overlap
ChIP MCF-7 ENCFF724VCQ 257 bp overlap
ChIP SK-N-SH ENCFF747MAS 235 bp overlap
ChIP liver ENCFF485PAC 368 bp overlap
ChIP liver ENCFF522JHE 316 bp overlap
REST 4 datasets
ChIP H1 ENCFF429RUE 199 bp overlap
ChIP HEK293 ENCFF073DOT 288 bp overlap
ChIP K562 ENCFF430APM 173 bp overlap
ChIP MCF-7 ENCFF893RRD 289 bp overlap
RORA 2 datasets
Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap
Motif ES_0h ES_0h-RORA_MA0071.1 10 bp overlap
SMC3 3 datasets
ChIP A549 ENCFF747SCJ 231 bp overlap
ChIP K562 ENCFF582XIX 265 bp overlap
ChIP SK-N-SH ENCFF791WFB 208 bp overlap
STAG1 1 dataset
ChIP HepG2 ENCFF843EBZ 301 bp overlap
ZBTB18 1 dataset
Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 393 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 297 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 235 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF271FQR 402 bp overlap
ZNF654 1 dataset
ChIP HEK293 ENCFF636WIC 292 bp overlap
ZNF784 2 datasets
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
Motif DE_24h DE_24h-ZNF784_MA1717.2 8 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Zic1::Zic2 4 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_24h DE_24h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 4 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_24h DE_24h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap