chr3 : 145,006,338 – 145,006,596
258 bp 28 TFs 0 linked genes
This 258 bp open chromatin element has no linked target genes and is bound by 28 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:145,001,338 – 145,011,596
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
AR 11 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 131 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ChIP MCF-7 ERP001226.AR.MCF-7 142 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 258 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 181 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 235 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 225 bp overlap
ChIP MDA-MB-453_MPA GSE74069.AR.MDA-MB-453_MPA 236 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 240 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 231 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 178 bp overlap
ARID1A 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 258 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 258 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 235 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 160 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 235 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 226 bp overlap
CREB1 1 dataset
ChIP MDA-MB-134-VI_FI GSE109103.CREB1.MDA-MB-134-VI_FI 225 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 166 bp overlap
ESR1 14 datasets
ChIP MCF-7 GSE117492.ESR1.MCF-7 173 bp overlap
ChIP MCF-7 GSE41561.ESR1.MCF-7 142 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 238 bp overlap
ChIP MCF-7_EtOH GSE136673.ESR1.MCF-7_EtOH 229 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 258 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 178 bp overlap
ChIP MCF-7_ICI GSE125594.ESR1.MCF-7_ICI 195 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 178 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 239 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 175 bp overlap
ChIP MCF-7_Veh GSE95302.ESR1.MCF-7_Veh 155 bp overlap
ChIP ZR751 GSE72249.ESR1.ZR751 228 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 245 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 258 bp overlap
FOXA1 17 datasets
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 92 bp overlap
ChIP A1A3_Brg1KD_EtOH GSE112491.FOXA1.A1A3_Brg1KD_EtOH 140 bp overlap
ChIP A1A3_Dex GSE112491.FOXA1.A1A3_Dex 221 bp overlap
ChIP A1A3_EtOH GSE112491.FOXA1.A1A3_EtOH 256 bp overlap
ChIP LAPC-4_CST_V5 GSE123618.FOXA1.LAPC-4_CST_V5 158 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 257 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 180 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 185 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 244 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 227 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 258 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 157 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 258 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 258 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 258 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 244 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 236 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 258 bp overlap
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 227 bp overlap
ChIP DE DE-FOXA2-1 258 bp overlap
ChIP DE DE-FOXA2-2 258 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 137 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 258 bp overlap
GATA3 13 datasets
ChIP A1A3_Brg1KD_EtOH GSE112491.GATA3.A1A3_Brg1KD_EtOH 169 bp overlap
ChIP A1A3_Dex GSE112491.GATA3.A1A3_Dex 231 bp overlap
ChIP A1A3_EtOH GSE112491.GATA3.A1A3_EtOH 202 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 135 bp overlap
ChIP MCF-7 ENCFF437NQS 258 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 258 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 229 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 258 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 258 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 258 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 258 bp overlap
ChIP MCF-7_ICI GSE81510.GATA3.MCF-7_ICI 145 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 204 bp overlap
GATA4 9 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 258 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 258 bp overlap
ChIP DE DE-GATA4-1 258 bp overlap
ChIP DE DE-GATA4-2 258 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 258 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 243 bp overlap
ChIP foregut GSE117136.GATA4.foregut 258 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 258 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 258 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 247 bp overlap
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 145 bp overlap
ChIP DE DE-GATA6-1 258 bp overlap
ChIP DE DE-GATA6-2 258 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 258 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 258 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 207 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 229 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 178 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 258 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 258 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 163 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 229 bp overlap
ChIP foregut GSE117136.GATA6.foregut 258 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 258 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 104 bp overlap
HOXB13 2 datasets
ChIP 22Rv1 GSE96652.HOXB13.22Rv1 158 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 136 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 258 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 258 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 258 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 124 bp overlap
NR3C1 3 datasets
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 206 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 205 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 253 bp overlap
NR4A1 1 dataset
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 136 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 102 bp overlap
RXR 1 dataset
ChIP LS180_125 GSE31939.RXR.LS180_125 158 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 98 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 98 bp overlap
STAT3 1 dataset
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 216 bp overlap
SUZ12 1 dataset
ChIP ProEs GSE59087.SUZ12.ProEs 125 bp overlap
TCF7L2 2 datasets
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 148 bp overlap
ChIP Panc1 ENCFF829HHL 258 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 226 bp overlap
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