chr3 : 130,059,037 – 130,059,750
713 bp 47 TFs 4 linked genes
This 713 bp open chromatin element is linked to 4 target genes and is bound by 47 transcription factors.
Linked Genes
4 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ALG1L2 34.5 kb Distal Multiome
ENSG00000291081 52.1 kb Distal Multiome
LINC02021 52.3 kb Distal Multiome
TMCC1 165.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:130,054,037 – 130,064,750
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
Bach1::Mafk 1 dataset
Motif DE_72h DE_72h-Bach1Mafk_MA0591.2 12 bp overlap
CEBPA 1 dataset
Motif DE_72h DE_72h-CEBPA_MA0102.5 10 bp overlap
CEBPD 1 dataset
Motif DE_72h DE_72h-CEBPD_MA0836.3 8 bp overlap
CTCF 2 datasets
Motif DE_60h DE_60h-CTCF_MA1929.2 31 bp overlap
Motif DE_72h DE_72h-CTCF_MA1929.2 31 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 531 bp overlap
ChIP DE DE-FOXA2-2 638 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 548 bp overlap
ChIP DE DE-GATA4-2 656 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 515 bp overlap
ChIP DE DE-GATA6-2 713 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 535 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 448 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 557 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 552 bp overlap
HOXB13 3 datasets
Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
Motif DE_72h DE_72h-HOXB13_MA0901.3 9 bp overlap
Hoxa13 3 datasets
Motif DE_48h DE_48h-Hoxa13_MA0650.4 8 bp overlap
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
Motif DE_72h DE_72h-Hoxa13_MA0650.4 8 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 510 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 590 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 536 bp overlap
KLF1 3 datasets
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
Motif DE_72h DE_72h-KLF1_MA0493.3 8 bp overlap
KLF10 3 datasets
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
Motif DE_72h DE_72h-KLF10_MA1511.2 9 bp overlap
KLF14 3 datasets
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
Motif DE_72h DE_72h-KLF14_MA0740.2 9 bp overlap
KLF16 3 datasets
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
Motif DE_60h DE_60h-KLF16_MA0741.1 11 bp overlap
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
KLF2 3 datasets
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
Motif DE_72h DE_72h-KLF2_MA1515.2 8 bp overlap
KLF4 3 datasets
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
Motif DE_72h DE_72h-KLF4_MA0039.5 8 bp overlap
KLF5 3 datasets
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
KLF9 3 datasets
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
Motif DE_72h DE_72h-KLF9_MA1107.3 11 bp overlap
Mecom 1 dataset
Motif DE_72h DE_72h-Mecom_MA0029.2 11 bp overlap
NR2C2 3 datasets
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
Motif DE_72h DE_72h-NR2C2_MA0504.2 14 bp overlap
Nfat5 3 datasets
Motif DE_48h DE_48h-Nfat5_MA0606.3 8 bp overlap
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc2 3 datasets
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_72h DE_72h-Nfatc2_MA0152.3 8 bp overlap
Nr2F6 3 datasets
Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_60h DE_60h-Nr2F6_MA0728.1 15 bp overlap
Motif DE_72h DE_72h-Nr2F6_MA0728.1 15 bp overlap
PATZ1 3 datasets
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_60h DE_60h-PATZ1_MA1961.2 11 bp overlap
Motif DE_72h DE_72h-PATZ1_MA1961.2 11 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 270 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 244 bp overlap
PRDM10 1 dataset
ChIP K562 ENCFF740YLK 245 bp overlap
Plagl1 3 datasets
Motif DE_48h DE_48h-Plagl1_MA1615.2 8 bp overlap
Motif DE_60h DE_60h-Plagl1_MA1615.2 8 bp overlap
Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap
RELA 1 dataset
Motif DE_72h DE_72h-RELA_MA0107.1 10 bp overlap
Rarg 3 datasets
Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap
Motif DE_60h DE_60h-Rarg_MA0859.2 15 bp overlap
Motif DE_72h DE_72h-Rarg_MA0859.2 15 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 523 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 479 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 713 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 566 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 571 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 330 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 597 bp overlap
SP3 3 datasets
Motif DE_48h DE_48h-SP3_MA0746.3 11 bp overlap
Motif DE_60h DE_60h-SP3_MA0746.3 11 bp overlap
Motif DE_72h DE_72h-SP3_MA0746.3 11 bp overlap
SP5 3 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
TBP 3 datasets
Motif DE_48h DE_48h-TBP_MA0108.3 7 bp overlap
Motif DE_60h DE_60h-TBP_MA0108.3 7 bp overlap
Motif DE_72h DE_72h-TBP_MA0108.3 7 bp overlap
TBX19 1 dataset
Motif DE_72h DE_72h-TBX19_MA0804.2 17 bp overlap
Tfcp2l1 2 datasets
Motif DE_60h DE_60h-Tfcp2l1_MA0145.2 14 bp overlap
Motif DE_72h DE_72h-Tfcp2l1_MA0145.2 14 bp overlap
Wt1 3 datasets
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
Motif DE_72h DE_72h-Wt1_MA1627.2 10 bp overlap
Yy1 3 datasets
Motif DE_48h DE_48h-Yy1_MA0095.4 8 bp overlap
Motif DE_60h DE_60h-Yy1_MA0095.4 8 bp overlap
Motif DE_72h DE_72h-Yy1_MA0095.4 8 bp overlap
ZFP42 3 datasets
Motif DE_48h DE_48h-ZFP42_MA1651.2 13 bp overlap
Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap
Motif DE_72h DE_72h-ZFP42_MA1651.2 13 bp overlap
ZNF528 2 datasets
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
Motif DE_72h DE_72h-ZNF528_MA1597.1 17 bp overlap
ZNF707 2 datasets
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
Motif DE_72h DE_72h-ZNF707_MA1715.1 15 bp overlap
ZNF740 3 datasets
Motif DE_48h DE_48h-ZNF740_MA0753.3 10 bp overlap
Motif DE_60h DE_60h-ZNF740_MA0753.3 10 bp overlap
Motif DE_72h DE_72h-ZNF740_MA0753.3 10 bp overlap
Zfp335 1 dataset
Motif DE_72h DE_72h-Zfp335_MA2002.2 7 bp overlap
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