chr3 : 115,657,252 – 115,657,633
381 bp 24 TFs 1 linked gene
This 381 bp open chromatin element is linked to ENSG00000241596 and is bound by 24 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000241596 898 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:115,652,252 – 115,662,633
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 204 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 149 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 144 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 285 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 69 bp overlap
CTCF 69 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 145 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 189 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 210 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 193 bp overlap
ChIP GM12864 ENCFF357DQE 259 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 133 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 98 bp overlap
ChIP GM12872 ENCFF697BYI 218 bp overlap
ChIP GM12873 ENCFF711LOS 233 bp overlap
ChIP GM23338 ENCFF531QOI 109 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF764RHO 270 bp overlap
ChIP H9 ENCFF152GTF 250 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 188 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 268 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 138 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 304 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 221 bp overlap
ChIP HCT116 ENCFF003KHP 303 bp overlap
ChIP HCT116 ENCFF209YMI 256 bp overlap
ChIP HFFc6 ENCFF005CJI 175 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 173 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 119 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 79 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP KMS-11 ENCFF853JKX 381 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 130 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 126 bp overlap
ChIP Loucy ENCFF359TVQ 365 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 251 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 197 bp overlap
ChIP NCI-H929 ENCFF305JAB 381 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 272 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 328 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 266 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 214 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 268 bp overlap
ChIP Panc1 ENCFF056JQX 271 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 109 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 155 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 381 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 222 bp overlap
ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 181 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 242 bp overlap
ChIP endodermal cell ENCFF471YCZ 274 bp overlap
ChIP endodermal cell ENCFF471YCZ 280 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 381 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 274 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 69 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 200 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 244 bp overlap
ChIP fibroblast of lung ENCFF084DUH 283 bp overlap
ChIP fibroblast_LUNG ENCSR000DWY.CTCF.fibroblast_LUNG 160 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 187 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 272 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 202 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 155 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 231 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 250 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 222 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 163 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 140 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 160 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 164 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 192 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 216 bp overlap
ChIP nerve_tibial ENCSR469POZ.CTCF.nerve_tibial 289 bp overlap
ChIP neural crest cell ENCFF182LWK 359 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 306 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 67 bp overlap
EZH2 1 dataset
ChIP endothelial cell of umbilical vein ENCFF539AKL 72 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 306 bp overlap
ChIP DE DE-FOXA2-2 252 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 381 bp overlap
ChIP DE DE-GATA4-2 299 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 294 bp overlap
ChIP DE DE-GATA6-2 286 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 181 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 268 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 80 bp overlap
IRF4 1 dataset
ChIP B-cell GSE142493.IRF4.B-cell 54 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 172 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 61 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 271 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 86 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 94 bp overlap
ONECUT1 4 datasets
ChIP H9 ERP004206.ONECUT1.H9 210 bp overlap
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 232 bp overlap
ChIP HepG2 ENCFF243FIR 310 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 381 bp overlap
ONECUT2 1 dataset
ChIP Hep-G2 ENCSR661PKJ.ONECUT2.Hep-G2 121 bp overlap
PRPF4 2 datasets
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 120 bp overlap
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 116 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 186 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 130 bp overlap
SPI1 8 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 83 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 95 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 95 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 92 bp overlap
ChIP GM12891 ENCFF563IUT 103 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 80 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 66 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 73 bp overlap
SPIB 3 datasets
ChIP OCI-Ly10 GSE56857.SPIB.OCI-Ly10 72 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 113 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 151 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 125 bp overlap
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