chr1 : 61,547,354 61,547,753
399 bp 45 TFs 0 linked genes
This 399 bp open chromatin element has no linked target genes and is bound by 45 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:61,542,354 – 61,552,753
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
45 transcription factors
Source
Cell type
BCL6 2 datasets
Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap
Motif ES_0h ES_0h-BCL6_MA0463.3 13 bp overlap
BCL6B 2 datasets
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
CLOCK 1 dataset
ChIP U2OS GSE44236.CLOCK.U2OS 82 bp overlap
CTCF 162 datasets
ChIP 22Rv1 ENCFF466OXN 201 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 288 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 285 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 239 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 138 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 294 bp overlap
ChIP A673 ENCFF123WOM 192 bp overlap
ChIP B cell ENCFF506FKC 359 bp overlap
ChIP BE2C ENCFF757SRF 289 bp overlap
ChIP C4-2B ENCFF821XVN 399 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 284 bp overlap
ChIP CD14-positive monocyte ENCFF087XLR 399 bp overlap
ChIP CD14-positive monocyte ENCFF590KQU 393 bp overlap
ChIP Caco-2 ENCFF934QYS 217 bp overlap
ChIP D721Med ENCFF513FYD 211 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP DND-41 ENCFF913MRA 313 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 142 bp overlap
ChIP DOHH2 ENCFF637WNW 244 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 399 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 297 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 221 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 166 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 142 bp overlap
ChIP GM10248 ENCFF083HVS 165 bp overlap
ChIP GM10266 ENCFF241YYF 177 bp overlap
ChIP GM12864 ENCFF357DQE 284 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 134 bp overlap
ChIP GM12865 ENCFF067GFI 257 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 107 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 136 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 110 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 115 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 115 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 128 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 126 bp overlap
ChIP GM12872 ENCFF697BYI 278 bp overlap
ChIP GM12873 ENCFF711LOS 252 bp overlap
ChIP GM12873 ENCSR000DRP.CTCF.GM12873 161 bp overlap
ChIP GM12874 ENCFF942MTD 251 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 179 bp overlap
ChIP GM12875 ENCFF081UCQ 257 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 138 bp overlap
ChIP GM12878 ENCFF217EAX 300 bp overlap
ChIP GM12878 ENCFF485TGR 251 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCFF635MMB 217 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 290 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 172 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 108 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM13977 ENCSR000DLB.CTCF.GM13977 122 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 248 bp overlap
ChIP GM20000 ENCFF217HWJ 165 bp overlap
ChIP GM20000 ENCFF218HKS 165 bp overlap
ChIP GM23338 ENCFF531QOI 304 bp overlap
ChIP GM23338 ENCFF772DML 178 bp overlap
ChIP GM23338 ENCFF832KWE 396 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 399 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 165 bp overlap
ChIP H9 ENCFF152GTF 326 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 114 bp overlap
ChIP HCT116 ENCFF003KHP 353 bp overlap
ChIP HEK293 ENCFF498RMM 261 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 134 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 376 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 255 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 266 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 309 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 208 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 129 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 131 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 121 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP HepG2 ENCFF194VBQ 92 bp overlap
ChIP HepG2 ENCFF348BUL 51 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP HepG2 ENCFF757EKU 320 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 364 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 328 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 153 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 236 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 224 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 133 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 150 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 122 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 352 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 336 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF111MGE 62 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP K562 ENCFF430KTH 352 bp overlap
ChIP K562 ENCFF598YSU 271 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 399 bp overlap
ChIP Loucy ENCFF359TVQ 273 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 386 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 170 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 131 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 237 bp overlap
ChIP MM.1S ENCFF869JMQ 350 bp overlap
ChIP NB4 ENCFF155DNY 251 bp overlap
ChIP NB4 ENCSR000DWN.CTCF.NB4 115 bp overlap
ChIP OCI-LY1 ENCFF455ESK 210 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 103 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 294 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 314 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 354 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 293 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 399 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 324 bp overlap
ChIP RWPE2 ENCFF911IEE 399 bp overlap
ChIP SK-N-SH ENCFF575DMG 371 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 113 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 352 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 399 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 134 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 104 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 142 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 224 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 145 bp overlap
ChIP WTC11 ENCFF658QVH 368 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 399 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 399 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 399 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 118 bp overlap
ChIP chondrocyte ENCFF134ORZ 391 bp overlap
ChIP endodermal cell ENCFF471YCZ 322 bp overlap
ChIP endothelial cell ENCFF663LIE 399 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 358 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 288 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 146 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 163 bp overlap
ChIP erythroid_Don001 GSE137982.CTCF.erythroid_Don001 153 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 321 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 221 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 217 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 307 bp overlap
ChIP heart right ventricle ENCFF767XJQ 304 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 106 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 303 bp overlap
ChIP neural crest cell ENCFF182LWK 369 bp overlap
ChIP neural progenitor cell ENCFF420RBO 158 bp overlap
ChIP neural progenitor cell ENCFF581WPG 399 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 190 bp overlap
ChIP osteocyte ENCFF929FPD 335 bp overlap
ChIP placenta ENCFF029PHY 134 bp overlap
ChIP plasmablast GSE142493.CTCF.plasmablast 145 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 349 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 324 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 369 bp overlap
ELF1 2 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
MEF2A 1 dataset
Motif ES_0h ES_0h-MEF2A_MA0052.5 10 bp overlap
MSC 2 datasets
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFIB 4 datasets
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
Motif ES_0h ES_0h-NFIB_MA1643.2 17 bp overlap
ChIP MCF-7 ENCFF799WGQ 361 bp overlap
ChIP MCF-7 ENCFF925CGH 330 bp overlap
NFIC 4 datasets
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
Motif ES_0h ES_0h-NFIC_MA1527.2 15 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 211 bp overlap
ChIP K562 ENCFF167YID 219 bp overlap
NFIC::TLX1 2 datasets
Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap
Motif ES_0h ES_0h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA1528.2 14 bp overlap
Motif ES_0h ES_0h-NFIX_MA1528.2 14 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1619.2 8 bp overlap
RAD21 13 datasets
ChIP GM12878 ENCFF101UQZ 191 bp overlap
ChIP GP5D GSE51234.RAD21.GP5D 265 bp overlap
ChIP H1 ENCFF698EWO 114 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP HepG2 ENCFF906QIS 57 bp overlap
ChIP Ishikawa ENCFF570JVV 225 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 116 bp overlap
ChIP K562 ENCFF169SQI 171 bp overlap
ChIP K562 ENCFF634XYR 316 bp overlap
ChIP LoVo_PHASES GSE51290.RAD21.LoVo_PHASES 341 bp overlap
ChIP MCF-7 ENCFF694KOM 302 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
SMC1 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.SMC1.monocyte_IFNg-LPS 133 bp overlap
SMC1A 2 datasets
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 144 bp overlap
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 149 bp overlap
SMC3 3 datasets
ChIP GM12878 ENCFF085RLZ 271 bp overlap
ChIP GP5D GSE51234.SMC3.GP5D 193 bp overlap
ChIP HepG2 ENCFF745UAV 271 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
STAG1 1 dataset
ChIP HepG2 ENCFF843EBZ 276 bp overlap
STAT1 2 datasets
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
STAT3 2 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TFAP4 5 datasets
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
Motif ES_0h ES_0h-TFAP4_MA0691.1 10 bp overlap
ChIP HepG2 ENCFF030SRU 343 bp overlap
ChIP HepG2 ENCFF932XOY 336 bp overlap
ChIP K562 ENCFF727PXG 399 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
ZBTB26 2 datasets
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap
ZNF135 2 datasets
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
Motif ES_0h ES_0h-ZNF135_MA1587.1 14 bp overlap
ZNF143 2 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
Motif ES_0h ES_0h-ZNF143_MA0088.2 16 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF449 1 dataset
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF526 1 dataset
ChIP HepG2 ENCFF325FWI 368 bp overlap
ZNF574 1 dataset
ChIP HepG2 ENCFF206MMY 177 bp overlap