chr3 : 102,480,068 – 102,480,569
501 bp 24 TFs 0 linked genes
This 501 bp open chromatin element has no linked target genes and is bound by 24 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:102,475,068 – 102,485,569
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
AR 39 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 331 bp overlap
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 143 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 256 bp overlap
ChIP LNCaP GSE117430.AR.LNCaP 201 bp overlap
ChIP LNCaP GSE110655.AR.LNCaP 234 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 225 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 198 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 283 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 214 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 383 bp overlap
ChIP LNCaP_1F5 GSE30623.AR.LNCaP_1F5 131 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 286 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 196 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 256 bp overlap
ChIP LNCaP_R1881_HOTAIR GSE61268.AR.LNCaP_R1881_HOTAIR 139 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 146 bp overlap
ChIP LNCaP_SHCTR_R1881 GSE37345.AR.LNCaP_SHCTR_R1881 152 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 152 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 233 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 221 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 242 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 205 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 245 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 262 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 291 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 343 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 160 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 248 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 183 bp overlap
ChIP prostate-cancer_PDX_141 GSE130408.AR.prostate-cancer_PDX_141 203 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 133 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 67 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 186 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 139 bp overlap
ChIP prostate-cancer_shCXXC5 GSE136128.AR.prostate-cancer_shCXXC5 194 bp overlap
ChIP prostate-cancer_shTET2 GSE136128.AR.prostate-cancer_shTET2 221 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 244 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 175 bp overlap
ChIP prostate_P25 GSE130408.AR.prostate_P25 205 bp overlap
ASH2L 1 dataset
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 355 bp overlap
BRD4 5 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 501 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 180 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 163 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 286 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.BRD4.LNCaP-clone-FGC_DHT-DMSO 481 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 207 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 255 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 159 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap
ESR1 2 datasets
ChIP T-47D_D538G GSE148277.ESR1.T-47D_D538G 327 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 392 bp overlap
FOXA1 5 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 219 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 146 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 137 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 80 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 173 bp overlap
GRHL2 2 datasets
ChIP LNCaP GSE80256.GRHL2.LNCaP 296 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 172 bp overlap
GTF2B 1 dataset
ChIP IMR-90_TERT GSE38303.GTF2B.IMR-90_TERT 140 bp overlap
HOXB13 7 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 97 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 186 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 162 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 209 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 233 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 205 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 303 bp overlap
IRF4 1 dataset
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 85 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 240 bp overlap
MED1 1 dataset
ChIP SGBS GSE64233.MED1.SGBS 226 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 127 bp overlap
NR3C1 1 dataset
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 105 bp overlap
PGR 6 datasets
ChIP T-47D_PG GSE68356.PGR.T-47D_PG 219 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 316 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 289 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 207 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 375 bp overlap
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 275 bp overlap
RELA 2 datasets
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 141 bp overlap
ChIP SGBS GSE64233.RELA.SGBS 228 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 232 bp overlap
STAT3 13 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 213 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 153 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 229 bp overlap
ChIP T-47D_JC4735 GSE126004.STAT3.T-47D_JC4735 195 bp overlap
ChIP T-47D_JC4739 GSE126004.STAT3.T-47D_JC4739 205 bp overlap
ChIP T-47D_JC4741 GSE126004.STAT3.T-47D_JC4741 324 bp overlap
ChIP T-47D_JC4751 GSE126004.STAT3.T-47D_JC4751 370 bp overlap
ChIP T-47D_JC4753 GSE126004.STAT3.T-47D_JC4753 379 bp overlap
ChIP T-47D_JC4755 GSE126004.STAT3.T-47D_JC4755 273 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 415 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 427 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 453 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 390 bp overlap
SUZ12 1 dataset
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 233 bp overlap
VDR 1 dataset
ChIP LNCaP GSE64656.VDR.LNCaP 236 bp overlap
YY1AP1 2 datasets
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 287 bp overlap
ChIP T-47D_Veh GSE125594.YY1AP1.T-47D_Veh 325 bp overlap
Huangfu Lab · Publications · Resources · Contact