chr3 : 99,645,775 99,646,027
252 bp 30 TFs 1 linked gene
This 252 bp open chromatin element is linked to COL8A1 and is bound by 30 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
COL8A1 7.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:99,640,775 – 99,651,027
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
30 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP Aska-SS GSE108025.ARID2.Aska-SS 239 bp overlap
BRD4 5 datasets
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 126 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 167 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 123 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 132 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 137 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 252 bp overlap
CTCF 92 datasets
ChIP 22Rv1 ENCFF466OXN 79 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 74 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 141 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 169 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 95 bp overlap
ChIP C4-2B ENCFF821XVN 130 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 176 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 227 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 89 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 217 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 59 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 225 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 94 bp overlap
ChIP GM23338 ENCFF832KWE 126 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 126 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 79 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 252 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 100 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 114 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 204 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 188 bp overlap
ChIP HFFc6 ENCFF005CJI 57 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 186 bp overlap
ChIP HeLa-S3_biotin GSE108869.CTCF.HeLa-S3_biotin 66 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 110 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 138 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 82 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 213 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 116 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 232 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 166 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 166 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 127 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 58 bp overlap
ChIP Panc1 ENCFF056JQX 164 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 173 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 193 bp overlap
ChIP RWPE2 ENCFF911IEE 153 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 97 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 56 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 105 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 62 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 107 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-0h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-0h 79 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 218 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 85 bp overlap
ChIP brain ENCFF099ASU 113 bp overlap
ChIP breast_epithelium ENCSR661NXJ.CTCF.breast_epithelium 226 bp overlap
ChIP chondrocyte ENCFF134ORZ 199 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 51 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 69 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF373BUI 63 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 213 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 72 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 86 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 103 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF749FBO 110 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF756TDJ 55 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 98 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF851XUX 180 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 212 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 58 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR353DFU.CTCF.esophagus_muscularis-mucosa 209 bp overlap
ChIP gastrocnemius medialis ENCFF307PRR 73 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 252 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 208 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 177 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 90 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 203 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 201 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 166 bp overlap
ChIP heart left ventricle ENCFF832OXT 81 bp overlap
ChIP heart left ventricle ENCFF888ERQ 87 bp overlap
ChIP heart right ventricle ENCFF725NNJ 121 bp overlap
ChIP heart right ventricle ENCFF767XJQ 69 bp overlap
ChIP heart right ventricle ENCFF979TCT 80 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 124 bp overlap
ChIP left lung ENCFF620MAT 72 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 248 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 252 bp overlap
ChIP nephron ENCFF589HXU 56 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 165 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 252 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 210 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 106 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 252 bp overlap
ChIP right atrium auricular region ENCFF471FFM 122 bp overlap
ChIP testis ENCFF919VBQ 59 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 118 bp overlap
ChIP tibial nerve ENCFF755YSO 50 bp overlap
ChIP tibial-nerve ENCSR793YAD.CTCF.tibial-nerve 71 bp overlap
ChIP upper lobe of left lung ENCFF654BFF 88 bp overlap
EP300 1 dataset
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 107 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 164 bp overlap
FOXF1 1 dataset
ChIP GIST48 GSE106624.FOXF1.GIST48 227 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 226 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 246 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 153 bp overlap
HIF1A 1 dataset
ChIP U2OS_DMSO GSE85096.HIF1A.U2OS_DMSO 157 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 231 bp overlap
IRF1 1 dataset
ChIP CD14_LPS GSE43036.IRF1.CD14_LPS 68 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 116 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 151 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 187 bp overlap
MYOG 2 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 115 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 84 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 159 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 53 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 127 bp overlap
POLR2A 2 datasets
ChIP endothelial cell of umbilical vein ENCFF303XUJ 94 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 211 bp overlap
RAD21 2 datasets
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 199 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 180 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 252 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 170 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 100 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 252 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 252 bp overlap
SMARCC1 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 252 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 233 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 93 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 252 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 252 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 151 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 51 bp overlap
TP63 1 dataset
ChIP MCF-10A_Nutlin3A GSE111009.TP63.MCF-10A_Nutlin3A 131 bp overlap