chr3 : 95,263,766 – 95,264,389
623 bp 46 TFs 0 linked genes
This 623 bp open chromatin element has no linked target genes and is bound by 46 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:95,258,766 – 95,269,389
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
AR 39 datasets
ChIP 22Rv1 GSE96652.AR.22Rv1 215 bp overlap
ChIP LNCaP GSE94682.AR.LNCaP 347 bp overlap
ChIP LNCaP GSE43720.AR.LNCaP 167 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 201 bp overlap
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 163 bp overlap
ChIP LNCaP-abl_DMSO GSE80238.AR.LNCaP-abl_DMSO 290 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-075 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-075 292 bp overlap
ChIP LNCaP-clone-FGC_DHT-ABBV-744 GSE118247.AR.LNCaP-clone-FGC_DHT-ABBV-744 310 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 359 bp overlap
ChIP LNCaP_1F5 GSE30623.AR.LNCaP_1F5 124 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 134 bp overlap
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 157 bp overlap
ChIP LNCaP_D226N_shFOXA1_Ethanol GSE128883.AR.LNCaP_D226N_shFOXA1_Ethanol 171 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 133 bp overlap
ChIP LNCaP_DHT GSE83860.AR.LNCaP_DHT 178 bp overlap
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 227 bp overlap
ChIP LNCaP_DHTTHZ1 GSE125245.AR.LNCaP_DHTTHZ1 127 bp overlap
ChIP LNCaP_DHT_Bag-1L-CMut GSE89938.AR.LNCaP_DHT_Bag-1L-CMut 175 bp overlap
ChIP LNCaP_DHT_TNFA GSE83860.AR.LNCaP_DHT_TNFA 191 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 252 bp overlap
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 190 bp overlap
ChIP LNCaP_GFP_Ethanol GSE128883.AR.LNCaP_GFP_Ethanol 179 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 231 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 140 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 178 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 310 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 315 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.AR.LNCaP_androgen-Y_hypoxia-Y 151 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 247 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 322 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 248 bp overlap
ChIP VCaP GSE148358.AR.VCaP 243 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 164 bp overlap
ChIP prostate GSE56288.AR.prostate 149 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 187 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 109 bp overlap
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 274 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 355 bp overlap
ChIP prostate_P25 GSE130408.AR.prostate_P25 329 bp overlap
ARID1A 1 dataset
ChIP LNCaP_r1881 GSE94682.ARID1A.LNCaP_r1881 287 bp overlap
CDX1 1 dataset
Motif DE_60h DE_60h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif DE_60h DE_60h-CDX4_MA1473.2 9 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 224 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
Ddit3::Cebpa 1 dataset
Motif DE_60h DE_60h-Ddit3Cebpa_MA0019.2 10 bp overlap
FOXA1 17 datasets
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 183 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 190 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 248 bp overlap
ChIP LNCaP GSE56288.FOXA1.LNCaP 165 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 245 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 165 bp overlap
ChIP LNCaP_DHT24H GSE58428.FOXA1.LNCaP_DHT24H 485 bp overlap
ChIP LNCaP_DSG GSE114737.FOXA1.LNCaP_DSG 235 bp overlap
ChIP LNCaP_G87R_shFOXA1 GSE128883.FOXA1.LNCaP_G87R_shFOXA1 321 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 209 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 383 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 283 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 293 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 319 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 190 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 198 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 185 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 533 bp overlap
ChIP DE DE-FOXA2-2 462 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 265 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 265 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 170 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 409 bp overlap
ChIP DE DE-GATA4-2 536 bp overlap
ChIP foregut GSE117136.GATA4.foregut 332 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 505 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 287 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 382 bp overlap
ChIP DE DE-GATA6-2 611 bp overlap
ChIP foregut GSE117136.GATA6.foregut 330 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 330 bp overlap
HOXA10 1 dataset
Motif DE_60h DE_60h-HOXA10_MA0899.2 9 bp overlap
HOXB13 23 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 347 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 212 bp overlap
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 190 bp overlap
ChIP prostate_2030 GSE130408.HOXB13.prostate_2030 185 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 239 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 254 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 249 bp overlap
ChIP prostate_2480 GSE130408.HOXB13.prostate_2480 252 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 282 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 332 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 239 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 391 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 191 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 213 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 248 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 361 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 392 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 245 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 290 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 189 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 316 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 223 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 215 bp overlap
HOXD9 1 dataset
Motif DE_60h DE_60h-HOXD9_MA0913.3 9 bp overlap
Hnf1A 1 dataset
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
Hoxa13 1 dataset
Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
NFATC3 1 dataset
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
Nfatc1 1 dataset
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 277 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 417 bp overlap
POU3F1 1 dataset
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_60h DE_60h-POU3F2_MA0787.1 12 bp overlap
RELA 1 dataset
ChIP LNCaP_SICTR_TNFA GSE83860.RELA.LNCaP_SICTR_TNFA 215 bp overlap
SIX2 1 dataset
Motif DE_60h DE_60h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 373 bp overlap
SOX10 2 datasets
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 208 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 386 bp overlap
SOX4 1 dataset
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SP5 1 dataset
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Sox11 1 dataset
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Spz1 1 dataset
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
TFAP4 1 dataset
ChIP LNCaP GSE28857.TFAP4.LNCaP 182 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 269 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 308 bp overlap
ZFP42 1 dataset
Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap
ZNF418 1 dataset
Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap
ZNF675 1 dataset
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
ZNF766 1 dataset
Motif DE_60h DE_60h-ZNF766_MA2098.1 9 bp overlap
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