chr3 : 84,234,802 84,235,101
299 bp 50 TFs 0 linked genes
This 299 bp open chromatin element has no linked target genes and is bound by 50 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:84,229,802 – 84,240,101
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
ATF4 1 dataset
Motif DE_48h DE_48h-ATF4_MA0833.3 10 bp overlap
BARX1 1 dataset
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CEBPG 1 dataset
Motif DE_48h DE_48h-CEBPG_MA1636.2 10 bp overlap
DLX1 1 dataset
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
DUX4 1 dataset
Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_48h DE_48h-DUXA_MA0884.2 13 bp overlap
Dlx3 1 dataset
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Dux 1 dataset
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
FOS 1 dataset
Motif DE_48h DE_48h-FOS_MA0476.2 8 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 299 bp overlap
ChIP DE DE-GATA4-2 299 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 249 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 299 bp overlap
ChIP DE DE-GATA6-2 299 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 299 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 299 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 299 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 299 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 299 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 299 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 284 bp overlap
GBX2 1 dataset
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
GLIS3 1 dataset
Motif DE_48h DE_48h-GLIS3_MA0737.1 14 bp overlap
HESX1 1 dataset
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
Jun 1 dataset
Motif DE_48h DE_48h-Jun_MA0489.3 8 bp overlap
LBX2 1 dataset
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
MSX1 1 dataset
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
MXI1 1 dataset
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
Msx3 1 dataset
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NR4A1 2 datasets
Motif DE_36h DE_36h-NR4A1_MA1112.3 8 bp overlap
Motif DE_48h DE_48h-NR4A1_MA1112.3 8 bp overlap
NR4A2 2 datasets
Motif DE_36h DE_36h-NR4A2_MA0160.3 8 bp overlap
Motif DE_48h DE_48h-NR4A2_MA0160.3 8 bp overlap
Nobox 1 dataset
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
PHOX2A 1 dataset
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
PROP1 1 dataset
Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap
Pax7 1 dataset
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
RAX 1 dataset
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RFX2 1 dataset
Motif DE_48h DE_48h-RFX2_MA0600.3 14 bp overlap
RFX5 1 dataset
Motif DE_48h DE_48h-RFX5_MA0510.3 14 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 267 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 292 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 299 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 299 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 299 bp overlap
SP5 1 dataset
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
ZBTB33 3 datasets
Motif DE_36h DE_36h-ZBTB33_MA0527.2 10 bp overlap
Motif DE_36h DE_36h-ZBTB33_MA0527.2 10 bp overlap
Motif DE_48h DE_48h-ZBTB33_MA0527.2 10 bp overlap
ZFP14 1 dataset
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
ZIC4 1 dataset
Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_48h DE_48h-ZIC5_MA1584.2 15 bp overlap
ZNF189 1 dataset
Motif DE_36h DE_36h-ZNF189_MA1725.2 9 bp overlap
ZNF341 1 dataset
Motif DE_36h DE_36h-ZNF341_MA1655.2 8 bp overlap
ZNF677 1 dataset
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZSCAN16 1 dataset
Motif DE_48h DE_48h-ZSCAN16_MA2100.1 18 bp overlap