chr3 : 51,544,443 51,544,698
255 bp 35 TFs 1 linked gene
This 255 bp open chromatin element is linked to RAD54L2 and is bound by 35 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RAD54L2 5.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:51,539,443 – 51,549,698
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 211 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE120058.ARID1A.RMG-I 186 bp overlap
BRD4 2 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 255 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 232 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 86 bp overlap
ChIP BLaER1 ENCFF274GAT 130 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 206 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 170 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 255 bp overlap
ChIP DE DE-FOXA2-2 255 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 255 bp overlap
ChIP DE DE-GATA4-2 255 bp overlap
ChIP foregut GSE117136.GATA4.foregut 255 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 255 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 255 bp overlap
ChIP DE DE-GATA6-2 255 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 255 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 255 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 255 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 255 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 255 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 255 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 255 bp overlap
ChIP foregut GSE117136.GATA6.foregut 255 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 169 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 255 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 255 bp overlap
JUN 1 dataset
ChIP DE_D2 S54-DE-d2-JUN-exp2 145 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 255 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 233 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 255 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 214 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 120 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 255 bp overlap
PBX2 1 dataset
ChIP K-562 ENCSR263DFP.PBX2.K-562 212 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 255 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 255 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 255 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 255 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 194 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 181 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 255 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 255 bp overlap
RFX1 1 dataset
ChIP MCF-7 ENCFF782EZS 63 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 130 bp overlap
SFPQ 1 dataset
ChIP LTAD_siCTBP1-AS-EtOH GSE94577.SFPQ.LTAD_siCTBP1-AS-EtOH 68 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 146 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 255 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 255 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 255 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 251 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 255 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 255 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 255 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 255 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 197 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 255 bp overlap
YY1 2 datasets
ChIP liver ENCFF400MBC 93 bp overlap
ChIP liver ENCFF515BWJ 124 bp overlap
ZFP69B 1 dataset
ChIP HEK293T GSE78099.ZFP69B.HEK293T 72 bp overlap