chr2 : 215,839,787 – 215,840,136
349 bp 31 TFs 1 linked gene
This 349 bp open chromatin element is linked to LINC00607 and is bound by 31 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00607 8.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:215,834,787 – 215,845,136
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP SUM1315_DMSO GSE63581.BRD4.SUM1315_DMSO 275 bp overlap
CEBPB 4 datasets
ChIP H1 ENCFF871PTR 206 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 115 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 148 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 157 bp overlap
CRY1 1 dataset
ChIP U2OS GSE44236.CRY1.U2OS 241 bp overlap
CTCF 134 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 292 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 234 bp overlap
ChIP A549 ENCFF034FVO 261 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 196 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 156 bp overlap
ChIP DND-41 ENCFF913MRA 226 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 161 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 349 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 349 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 248 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 159 bp overlap
ChIP GM12864 ENCFF357DQE 265 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 215 bp overlap
ChIP GM12865 ENCSR000DRE.CTCF.GM12865 189 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 106 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 247 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 117 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 143 bp overlap
ChIP GM12870 ENCSR000DRK.CTCF.GM12870 167 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 211 bp overlap
ChIP GM12873 ENCFF711LOS 230 bp overlap
ChIP GM12874 ENCFF942MTD 235 bp overlap
ChIP GM12874 ENCSR000DRR.CTCF.GM12874 184 bp overlap
ChIP GM23338 ENCFF531QOI 160 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 202 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 240 bp overlap
ChIP H9 ENCFF152GTF 216 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 194 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 193 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 209 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 262 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 187 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 201 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 192 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 128 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 214 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 217 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 154 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 219 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 326 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 260 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 150 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 266 bp overlap
ChIP HCT116 ENCFF003KHP 266 bp overlap
ChIP HCT116 ENCFF209YMI 253 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 95 bp overlap
ChIP HEC-1-B_a12-CBS-deletion GSE140868.CTCF.HEC-1-B_a12-CBS-deletion 108 bp overlap
ChIP HEK293 ENCFF498RMM 261 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 146 bp overlap
ChIP HFFc6 ENCFF005CJI 349 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 138 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 73 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 157 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 157 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 92 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 219 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 91 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 102 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 312 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 135 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 134 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 292 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 229 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 164 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 189 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 124 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 138 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 120 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 101 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 102 bp overlap
ChIP K-562_15923 GSE131349.CTCF.K-562_15923 118 bp overlap
ChIP K-562_8004 GSE131349.CTCF.K-562_8004 178 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 309 bp overlap
ChIP K562 ENCFF430KTH 347 bp overlap
ChIP K562 ENCFF598YSU 199 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 349 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 209 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 240 bp overlap
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 144 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 110 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 113 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 121 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 162 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 221 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 160 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 258 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 304 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 308 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 240 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 127 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 133 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 165 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 123 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 150 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 283 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 138 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 250 bp overlap
ChIP endodermal cell ENCFF471YCZ 214 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 131 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 124 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 204 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 143 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 164 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 255 bp overlap
ChIP fibroblast_CARDIAC ENCSR000DTF.CTCF.fibroblast_CARDIAC 176 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 158 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 274 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 121 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 187 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 204 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 196 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 130 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 223 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 178 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 220 bp overlap
ChIP keratinocyte ENCFF667ULX 263 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 226 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 215 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 225 bp overlap
ChIP leukemia_CEBPA-168h GSE142161.CTCF.leukemia_CEBPA-168h 223 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 239 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 212 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 349 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 174 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 136 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 158 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 156 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 199 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 216 bp overlap
CTCFL 1 dataset
ChIP K-562 ENCSR000BNK.CTCFL.K-562 114 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 241 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 349 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 250 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 222 bp overlap
ChIP MCF-7_E2_45m GSE67295.ESR1.MCF-7_E2_45m 162 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 232 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 165 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 180 bp overlap
KDM5B 1 dataset
ChIP Hep-G2 ENCSR227MRE.KDM5B.Hep-G2 180 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 349 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 349 bp overlap
MYCN 2 datasets
ChIP BE2C GSE80151.MYCN.BE2C 179 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 179 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 75 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 256 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 187 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 161 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
PRMT3 2 datasets
ChIP HepG2 ENCFF257VCG 265 bp overlap
ChIP HepG2 ENCFF257VCG 349 bp overlap
RAD21 6 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 118 bp overlap
ChIP H1 ENCFF698EWO 220 bp overlap
ChIP H1 ENCFF967OJF 195 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 191 bp overlap
ChIP HepG2 ENCFF963UBJ 217 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 130 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 317 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 273 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 189 bp overlap
STAG1 1 dataset
ChIP MCF-7 ERP000209.STAG1.MCF-7 185 bp overlap
TARDBP 2 datasets
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 349 bp overlap
ChIP K-562 GSE120104.TARDBP.K-562 160 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TP53 1 dataset
ChIP SaOS-2 ERP002038.TP53.SaOS-2 120 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 193 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 147 bp overlap
ChIP K562 ENCFF633EZB 200 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 164 bp overlap
YY1 2 datasets
ChIP WA01 GSE39096.YY1.WA01 236 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 165 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 159 bp overlap
ZNF207 1 dataset
ChIP GM12878 ENCSR117KWH.ZNF207.GM12878 349 bp overlap
ZNF737 1 dataset
ChIP Hep-G2 ENCSR127IHN.ZNF737.Hep-G2 171 bp overlap
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