chr2 : 104,754,457 – 104,755,217
760 bp 33 TFs 1 linked gene
This 760 bp open chromatin element is linked to LINC01114 and is bound by 33 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01114 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:104,749,457 – 104,760,217
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_DMSO_45min GSE90550.AHR.MCF-7_DMSO_45min 98 bp overlap
BRD4 5 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 129 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 472 bp overlap
ChIP LNCaP-C4-2_F133V_JQ1 GSE88871.BRD4.LNCaP-C4-2_F133V_JQ1 96 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 301 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 105 bp overlap
CTCF 29 datasets
ChIP AG04449 ENCFF248MBD 92 bp overlap
ChIP C4-2B ENCFF821XVN 408 bp overlap
ChIP HeLa-S3 ENCFF565UFR 83 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 90 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 78 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 72 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 221 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 133 bp overlap
ChIP MCF-7 ENCFF198DQX 122 bp overlap
ChIP MCF-7 ENCFF414SZG 105 bp overlap
ChIP MCF-7 ENCFF424NQR 126 bp overlap
ChIP MCF-7 ENCFF494VXA 122 bp overlap
ChIP MCF-7 ENCFF844STM 126 bp overlap
ChIP MCF-7 ENCFF954TUV 109 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 169 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 80 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 130 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 185 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 150 bp overlap
ChIP VCaP ENCFF858YQT 295 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 214 bp overlap
ChIP VCaP_ETOH GSE84432.CTCF.VCaP_ETOH 104 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 52 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF149PUN 86 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 156 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 57 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 186 bp overlap
ChIP fibroblast_SKIN_LEG ENCSR000DPG.CTCF.fibroblast_SKIN_LEG 52 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 120 bp overlap
CTCFL 1 dataset
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 52 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 251 bp overlap
ESR1 2 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 201 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 300 bp overlap
EZH2 2 datasets
ChIP T98G GSE112240.EZH2.T98G 84 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 425 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 508 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 126 bp overlap
GATA2 3 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 392 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 243 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 131 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 446 bp overlap
ChIP DE DE-GATA4-2 483 bp overlap
ChIP foregut GSE117136.GATA4.foregut 441 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 429 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 329 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 407 bp overlap
ChIP DE DE-GATA6-2 517 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 483 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 433 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 472 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 556 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 489 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 538 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 513 bp overlap
ChIP foregut GSE117136.GATA6.foregut 468 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 485 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 424 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 297 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 78 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 253 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 140 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 119 bp overlap
IRF4 1 dataset
ChIP U266 GSE142493.IRF4.U266 140 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 292 bp overlap
KDM1A 2 datasets
ChIP Kasumi-1_RN1 GSE71739.KDM1A.Kasumi-1_RN1 105 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 164 bp overlap
LDB1 2 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 63 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 88 bp overlap
MYCN 1 dataset
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 72 bp overlap
PGR 5 datasets
ChIP AB32 GSE31129.PGR.AB32 122 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 193 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 155 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 145 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 151 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 54 bp overlap
RAD21 1 dataset
ChIP MCF-7 GSE72082.RAD21.MCF-7 68 bp overlap
RBPJ 1 dataset
ChIP HCC1599_GSI GSE116871.RBPJ.HCC1599_GSI 72 bp overlap
RUNX1 5 datasets
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 68 bp overlap
ChIP Kasumi-1 GSE62847.RUNX1.Kasumi-1 52 bp overlap
ChIP ME-1 GSE117138.RUNX1.ME-1 98 bp overlap
ChIP ME-1_KD GSE128771.RUNX1.ME-1_KD 98 bp overlap
ChIP SKH1 GSE87283.RUNX1.SKH1 82 bp overlap
RUNX1T1 2 datasets
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 248 bp overlap
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 254 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 386 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 371 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 261 bp overlap
SMC1A 1 dataset
ChIP monocyte_INFg GSE98367.SMC1A.monocyte_INFg 67 bp overlap
SUZ12 2 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 263 bp overlap
ChIP Karpas-422_CPI360-D4 GSE134136.SUZ12.Karpas-422_CPI360-D4 126 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 213 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 259 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 116 bp overlap
ZFX 1 dataset
ChIP C4-2B ENCFF652WZM 138 bp overlap
Huangfu Lab · Publications · Resources · Contact