chr2 : 52,632,613 52,632,902
289 bp 35 TFs 0 linked genes
This 289 bp open chromatin element has no linked target genes and is bound by 35 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:52,627,613 – 52,637,902
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 67 bp overlap
CTCF 67 datasets
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 289 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 146 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 163 bp overlap
ChIP GM23338 ENCFF531QOI 220 bp overlap
ChIP GM23338 ENCFF772DML 168 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 268 bp overlap
ChIP H9 ENCFF152GTF 279 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 226 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 155 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 170 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 286 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 260 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 268 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 225 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 289 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 286 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 168 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 205 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 273 bp overlap
ChIP HCT116 ENCFF003KHP 289 bp overlap
ChIP HCT116 ENCFF209YMI 248 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 209 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 202 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 202 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 170 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 206 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 256 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 257 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 88 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 213 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 142 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 179 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 233 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 186 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 173 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 195 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 289 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 148 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 223 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 226 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 161 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 140 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 144 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 183 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 177 bp overlap
ChIP endodermal cell ENCFF471YCZ 265 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 251 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 274 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 228 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 191 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 262 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 237 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 237 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 176 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 241 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 270 bp overlap
ChIP neural progenitor cell ENCFF420RBO 289 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 283 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 179 bp overlap
CTCFL 1 dataset
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 209 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
HOXC13 1 dataset
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
RAD21 15 datasets
ChIP H1 ENCFF698EWO 89 bp overlap
ChIP H1 ENCFF967OJF 228 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 206 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 184 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 222 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 255 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 226 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 134 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 179 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 192 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 250 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 211 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 192 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 193 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 214 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 130 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 131 bp overlap
SMC1 1 dataset
ChIP HCT-116_RAD21-mAC GSE104888.SMC1.HCT-116_RAD21-mAC 233 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 195 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 143 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 228 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 228 bp overlap
TBP 1 dataset
Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TBX3 1 dataset
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
TFAP2A 1 dataset
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
TFAP2E 1 dataset
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF417 1 dataset
Motif DE_12h DE_12h-ZNF417_MA1727.2 7 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Zfp961 1 dataset
Motif DE_12h DE_12h-Zfp961_MA2126.1 8 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap