chrY : 2,835,067 2,835,464
397 bp 24 TFs 1 linked gene
This 397 bp open chromatin element is linked to RPS4Y1 and is bound by 24 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
RPS4Y1 6.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrY:2,830,067 – 2,840,464
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
CEBPA 2 datasets
ChIP Hep-G2 ERP000209.CEBPA.Hep-G2 154 bp overlap
ChIP THP-1_1-25D_24h GSE124032.CEBPA.THP-1_1-25D_24h 134 bp overlap
CEBPB 3 datasets
ChIP A549 ENCFF235AIY 156 bp overlap
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 140 bp overlap
ChIP Hep-G2 ENCSR000BQI.CEBPB.Hep-G2 129 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 135 bp overlap
ESR1 2 datasets
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 310 bp overlap
ChIP breast_tumor_Male_4 GSE104399.ESR1.breast_tumor_Male_4 200 bp overlap
FOXA1 20 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 200 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 168 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 233 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 216 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 214 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 208 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 237 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 139 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 195 bp overlap
ChIP 22Rv1_TFS_Crispr_WT3 GSE123618.FOXA1.22Rv1_TFS_Crispr_WT3 224 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 244 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 244 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 249 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 145 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 128 bp overlap
ChIP LNCaP_S2101-48H GSE114266.FOXA1.LNCaP_S2101-48H 208 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 141 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 224 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 175 bp overlap
ChIP liver ERP002306.FOXA1.liver 120 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 397 bp overlap
ChIP DE DE-FOXA2-2 397 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 220 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 122 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 140 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 132 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 231 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 338 bp overlap
ChIP DE DE-GATA4-2 397 bp overlap
ChIP foregut GSE117136.GATA4.foregut 316 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 397 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 179 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 339 bp overlap
ChIP DE DE-GATA6-2 339 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 361 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 397 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 342 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 338 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 349 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 343 bp overlap
ChIP foregut GSE117136.GATA6.foregut 353 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 333 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 312 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 334 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF354NRH 273 bp overlap
JUN 2 datasets
ChIP DE_D1 S13-DE-d1-JUN-exp1 124 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 317 bp overlap
MED1 1 dataset
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 143 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 207 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 316 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 310 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 242 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 274 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 314 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 300 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 348 bp overlap
SP1 1 dataset
ChIP Hep-G2 ENCSR000BJX.SP1.Hep-G2 170 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 145 bp overlap
ZNF384 2 datasets
ChIP Hep-G2 ENCSR101FJU.ZNF384.Hep-G2 124 bp overlap
ChIP HepG2 ENCFF129PLC 181 bp overlap