chrX:47,381,691–47,382,470

chrX : 47,381,691 – 47,382,470

779 bp 17 TFs 11 linked genes

This 779 bp open chromatin element is linked to 11 target genes and is bound by 17 transcription factors.

Linked Genes

11 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ZNF157		11.6 kb	Distal	Multiome
ZNF41		100.4 kb	Distal	Multiome
USP11		149.2 kb	Distal	Multiome+HiCAR
CDK16		163.9 kb	Distal	Multiome+HiCAR
ARAF		179.0 kb	Distal	Multiome
UBA1		191.3 kb	Distal	Multiome+HiCAR
TIMP1		200.2 kb	Distal	Multiome
RBM10		236.9 kb	Distal	Multiome
NDUFB11		237.5 kb	Distal	Multiome
ELK1		268.4 kb	Distal	Multiome
UXT		276.9 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

17 transcription factors

ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 138 bp overlap

ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 118 bp overlap

ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 211 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 670 bp overlap

ChIP DE DE-FOXA2-2 670 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 641 bp overlap

ChIP DE DE-GATA4-2 686 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 629 bp overlap

GATA6 10 datasets

ChIP DE DE-GATA6-1 678 bp overlap

ChIP DE DE-GATA6-2 737 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 443 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 498 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 419 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 449 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 503 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 398 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 464 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 491 bp overlap

IKZF3 1 dataset

ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 189 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 281 bp overlap

NANOG 4 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 422 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 233 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 430 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 330 bp overlap

ChIP islet ERP001456.PDX1.islet 115 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 263 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 597 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 367 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 402 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 373 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 387 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 211 bp overlap

ChIP NPC GSE154479.TCF3.NPC 381 bp overlap

ZNF528 1 dataset

ChIP HEK293 GSE76494.ZNF528.HEK293 272 bp overlap