chr20 : 23,868,402 23,868,878
476 bp 62 TFs 0 linked genes
This 476 bp open chromatin element has no linked target genes and is bound by 62 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr20:23,863,402 – 23,873,878
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CDK9 1 dataset
ChIP MOLT-4_JQ1 GSE79288.CDK9.MOLT-4_JQ1 171 bp overlap
CEBPA 1 dataset
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
CEBPB 1 dataset
ChIP H1 ENCFF871PTR 261 bp overlap
CEBPD 1 dataset
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA0838.1 10 bp overlap
CTNNB1 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.CTNNB1.hESC_YAP-_activinA_15h 254 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 334 bp overlap
EZH2 1 dataset
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 87 bp overlap
FIGLA 1 dataset
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 441 bp overlap
ChIP DE DE-FOXA2-2 390 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 302 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 403 bp overlap
ChIP DE DE-GATA6-2 476 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 476 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 472 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 476 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 476 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 472 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HLF 1 dataset
Motif DE_12h DE_12h-HLF_MA0043.4 9 bp overlap
HOXA6 1 dataset
Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB6 1 dataset
Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap
HOXD8 1 dataset
Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 458 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 373 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 428 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 239 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 278 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCFF065NZG 281 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 272 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 127 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 206 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 267 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 257 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 235 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
POLR2A 1 dataset
ChIP GM23338 ENCFF450WCS 394 bp overlap
POU5F1 3 datasets
ChIP GM23338 ENCFF333SNB 292 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 254 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 66 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RBPJ 1 dataset
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 476 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 476 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 476 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 476 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 476 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 78 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 275 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 260 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 471 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 222 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 184 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 134 bp overlap
Stat5a 1 dataset
Motif DE_24h DE_24h-Stat5a_MA1624.2 9 bp overlap
Stat6 1 dataset
Motif DE_24h DE_24h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 274 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Thap11 1 dataset
Motif DE_24h DE_24h-Thap11_MA1573.2 14 bp overlap
ZEB1 1 dataset
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZNF274 1 dataset
Motif DE_24h DE_24h-ZNF274_MA1592.2 12 bp overlap
ZSCAN16 1 dataset
Motif DE_24h DE_24h-ZSCAN16_MA2100.1 18 bp overlap