chr19 : 46,587,845 46,588,467
622 bp 21 TFs 11 linked genes
This 622 bp open chromatin element is linked to 11 target genes and is bound by 21 transcription factors.
Linked Genes
11 genes
Gene Expression Dist. to TSS Distance Link type
PPP5D1P 12.8 kb Distal Multiome
CALM3 13.1 kb Distal Multiome
PRKD2 109.2 kb Distal Multiome
STRN4 157.7 kb Distal Multiome
FKRP 157.9 kb Distal Multiome
CCDC8 174.6 kb Distal Multiome
SLC1A5 200.5 kb Distal Multiome
PPP5C 241.0 kb Distal Multiome
AP2S1 262.7 kb Distal Multiome
ARHGAP35 272.9 kb Distal Multiome
HIF3A 291.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:46,582,845 – 46,593,467
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
21 transcription factors
Source
Cell type
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 435 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE45822.ESR1.MCF-7 269 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 309 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 269 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 155 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 205 bp overlap
ChIP MCF-7_SHFOXA1_E2_TNF GSE59530.ESR1.MCF-7_SHFOXA1_E2_TNF 124 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 502 bp overlap
ChIP DE DE-FOXA2-2 550 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 298 bp overlap
GATA2 2 datasets
ChIP SH-SY5Y ENCFF485YIB 282 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 136 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 622 bp overlap
ChIP DE DE-GATA4-2 622 bp overlap
ChIP foregut GSE117136.GATA4.foregut 435 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 274 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 622 bp overlap
ChIP DE DE-GATA6-2 622 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 622 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 622 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 622 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 622 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 622 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 622 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 622 bp overlap
ChIP foregut GSE117136.GATA6.foregut 433 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 250 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 279 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 615 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 396 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 512 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 586 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 437 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 370 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 622 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 622 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 622 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 622 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 622 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 622 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 622 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 622 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 340 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 450 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 356 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 421 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 341 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 157 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 277 bp overlap
ZNF148 1 dataset
ChIP K562 ENCFF352SDL 600 bp overlap
ZNF740 1 dataset
ChIP K562 ENCFF505NFV 597 bp overlap