chr19 : 38,622,158 38,622,847
689 bp 35 TFs 2 linked genes
This 689 bp open chromatin element is linked to EIF3K and MAP4K1 and is bound by 35 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
EIF3K 3.0 kb Proximal Proximity
MAP4K1 3.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:38,617,158 – 38,627,847
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_24h DE_24h-Arid3a_MA0151.1 6 bp overlap
CDX1 1 dataset
Motif DE_24h DE_24h-CDX1_MA0878.3 10 bp overlap
EGR1 1 dataset
Motif DE_24h DE_24h-EGR1_MA0162.5 10 bp overlap
GATA4 1 dataset
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_24h DE_24h-GATA5_MA0766.3 8 bp overlap
GATA6 4 datasets
Motif DE_24h DE_24h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 660 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 606 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 666 bp overlap
Gata3 1 dataset
Motif DE_24h DE_24h-Gata3_MA0037.5 8 bp overlap
Hmga1 1 dataset
Motif DE_24h DE_24h-Hmga1_MA2124.1 8 bp overlap
Hnf1A 2 datasets
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_24h DE_24h-Hnf1A_MA1991.2 10 bp overlap
IRF2 1 dataset
Motif DE_24h DE_24h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_24h DE_24h-IRF3_MA1418.2 17 bp overlap
IRF7 1 dataset
Motif DE_24h DE_24h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_24h DE_24h-IRF8_MA0652.2 13 bp overlap
JUN 2 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 383 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 689 bp overlap
Lef1 1 dataset
Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap
MEIS1 1 dataset
Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif DE_24h DE_24h-MEIS3_MA0775.2 7 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 112 bp overlap
POU1F1 1 dataset
Motif DE_24h DE_24h-POU1F1_MA0784.3 14 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 635 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 424 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 315 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 325 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 677 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 689 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 689 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 448 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 245 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 497 bp overlap
SOX21 2 datasets
Motif DE_24h DE_24h-SOX21_MA0866.1 15 bp overlap
Motif DE_24h DE_24h-SOX21_MA0866.1 15 bp overlap
SREBF1 1 dataset
Motif DE_24h DE_24h-SREBF1_MA0829.3 10 bp overlap
Six3 1 dataset
Motif DE_24h DE_24h-Six3_MA0631.2 11 bp overlap
Sox1 1 dataset
Motif DE_24h DE_24h-Sox1_MA0870.1 15 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
TCF7 1 dataset
Motif DE_24h DE_24h-TCF7_MA0769.3 7 bp overlap
TCF7L2 1 dataset
Motif DE_24h DE_24h-TCF7L2_MA0523.2 9 bp overlap
TRPS1 1 dataset
Motif DE_24h DE_24h-TRPS1_MA1970.2 8 bp overlap
ZNF257 1 dataset
Motif DE_24h DE_24h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap