chr2 : 905,221 905,711
490 bp 34 TFs 1 linked gene
This 490 bp open chromatin element is linked to LINC01939 and is bound by 34 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01939 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:900,221 – 910,711
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
AR 3 datasets
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 248 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 133 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 213 bp overlap
ASCL1 5 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 284 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 343 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 364 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 393 bp overlap
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 144 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 176 bp overlap
ATF3 1 dataset
ChIP WTC11 ENCFF519QFH 100 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 155 bp overlap
BRD4 3 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 231 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 241 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 252 bp overlap
CRX 2 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 328 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 249 bp overlap
CTCF 3 datasets
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 415 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 404 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 55 bp overlap
ESR1 30 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 309 bp overlap
ChIP MCF-7 GSE45822.ESR1.MCF-7 254 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 249 bp overlap
ChIP MCF-7_E2 GSE59530.ESR1.MCF-7_E2 278 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 254 bp overlap
ChIP MCF-7_E2 GSE86538.ESR1.MCF-7_E2 273 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 270 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 138 bp overlap
ChIP MCF-7_E2 GSE71276.ESR1.MCF-7_E2 220 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 193 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 176 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 200 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 185 bp overlap
ChIP MCF-7_E2_Dex GSE81510.ESR1.MCF-7_E2_Dex 197 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 326 bp overlap
ChIP MCF-7_GLYC ERP002305.ESR1.MCF-7_GLYC 262 bp overlap
ChIP MCF-7_LTED_E2 GSE86538.ESR1.MCF-7_LTED_E2 64 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 340 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 201 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 337 bp overlap
ChIP MCF-7_SHFOXA1_E2_TNF GSE59530.ESR1.MCF-7_SHFOXA1_E2_TNF 232 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 127 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 449 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 381 bp overlap
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 283 bp overlap
ChIP T-47D_R5020 GSE68355.ESR1.T-47D_R5020 251 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 453 bp overlap
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 267 bp overlap
ChIP breast-cancer_3840 GSE126004.ESR1.breast-cancer_3840 373 bp overlap
ChIP breast_tumor_Male_18 GSE104399.ESR1.breast_tumor_Male_18 201 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 188 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 231 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 431 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 398 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 324 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 237 bp overlap
KMT2A 1 dataset
ChIP RS4-11_DMSO-D3-180402 GSE127507.KMT2A.RS4-11_DMSO-D3-180402 70 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 206 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 127 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 358 bp overlap
PDX1 1 dataset
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 76 bp overlap
PGR 4 datasets
ChIP T-47D GSE31129.PGR.T-47D 224 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 351 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 281 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 335 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 138 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 172 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 156 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 441 bp overlap
SMARCA4 1 dataset
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 402 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_SNAI2 GSE55421.SNAI2.keratinocyte_SNAI2 209 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 301 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 60 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 254 bp overlap
ZNF263 1 dataset
ChIP WTC11 ENCFF893RTM 131 bp overlap
ZNF512 1 dataset
ChIP WTC11 ENCFF086TTM 133 bp overlap