Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

34 transcription factors

BRD4 1 dataset

ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap

CHD4 1 dataset

ChIP SCMC GSE155861.CHD4.SCMC 124 bp overlap

CTCF 1 dataset

ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 185 bp overlap

Crx 2 datasets

Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap

Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap

DUX4 2 datasets

Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap

Motif DE_48h DE_48h-DUX4_MA0468.1 11 bp overlap

Dmbx1 2 datasets

Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap

Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap

GATA6 7 datasets

ChIP DE DE-GATA6-2 282 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 466 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 466 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 413 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 434 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 466 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 438 bp overlap

GSC 2 datasets

Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap

Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap

GSC2 2 datasets

Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap

Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap

Gfi1B 2 datasets

Motif DE_36h DE_36h-Gfi1B_MA0483.2 10 bp overlap

Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap

JUN 5 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 405 bp overlap

ChIP DE_D1 S13-DE-d1-JUN-exp1 283 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 279 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 352 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 423 bp overlap

MYB 2 datasets

Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap

Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap

NKX6-3 2 datasets

Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap

Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap

OTX1 2 datasets

Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap

Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap

OTX2 2 datasets

Motif DE_36h DE_36h-OTX2_MA0712.3 7 bp overlap

Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap

PHOX2A 2 datasets

Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap

Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 2 datasets

Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap

Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap

PITX1 2 datasets

Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap

Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap

PITX2 2 datasets

Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap

Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap

PITX3 2 datasets

Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap

Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 254 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 247 bp overlap

PROP1 2 datasets

Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap

Motif DE_48h DE_48h-PROP1_MA0715.1 11 bp overlap

RHOXF1 2 datasets

Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 289 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 269 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 449 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 399 bp overlap

ZEB1 1 dataset

ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 150 bp overlap

ZNF140 2 datasets

Motif DE_36h DE_36h-ZNF140_MA1589.2 19 bp overlap

Motif DE_48h DE_48h-ZNF140_MA1589.2 19 bp overlap

ZNF300 1 dataset

ChIP HEK293T GSE78099.ZNF300.HEK293T 93 bp overlap

ZNF398 1 dataset

ChIP BG01V GSE133630.ZNF398.BG01V 158 bp overlap

ZNF574 1 dataset

Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap

ZNF768 1 dataset

Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap

Zfp335 2 datasets

Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap

Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap

Genome Browser