chr1 : 235,682,139 235,682,614
475 bp 44 TFs 0 linked genes
This 475 bp open chromatin element has no linked target genes and is bound by 44 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:235,677,139 – 235,687,614
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 315 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 265 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 111 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 256 bp overlap
ESR1 1 dataset
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 394 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 75 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 298 bp overlap
GATA2 1 dataset
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 362 bp overlap
ChIP DE DE-GATA4-2 475 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 329 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 475 bp overlap
ChIP DE DE-GATA6-2 475 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 346 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 344 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 289 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 475 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 329 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 315 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 355 bp overlap
ChIP foregut GSE117136.GATA6.foregut 285 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 324 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCFF252CFL 349 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
Nfatc2 1 dataset
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 187 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 171 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 156 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 306 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 146 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 441 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 319 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 327 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 142 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 161 bp overlap
SMARCA4 3 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 256 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 225 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 280 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 260 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 407 bp overlap
SPI1 1 dataset
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 239 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 252 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 145 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 179 bp overlap
ZEB1 2 datasets
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 131 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 298 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 335 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 175 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 305 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap