chr13 : 61,260,565 – 61,260,777
212 bp 27 TFs 0 linked genes
This 212 bp open chromatin element has no linked target genes and is bound by 27 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:61,255,565 – 61,265,777
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
27 transcription factors
Source
Cell type
CTCF 121 datasets
ChIP 22Rv1 ENCFF466OXN 212 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 212 bp overlap
ChIP A673 ENCFF123WOM 212 bp overlap
ChIP BE2C ENCFF757SRF 212 bp overlap
ChIP C4-2B ENCFF821XVN 212 bp overlap
ChIP D721Med ENCFF513FYD 184 bp overlap
ChIP GM10266 ENCFF241YYF 177 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCFF635MMB 193 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 212 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 98 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM23338 ENCFF531QOI 212 bp overlap
ChIP GM23338 ENCFF531QOI 124 bp overlap
ChIP GM23338 ENCFF772DML 176 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 192 bp overlap
ChIP H1 ENCFF764RHO 212 bp overlap
ChIP H9 ENCFF152GTF 212 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 189 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 193 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 210 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 175 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 212 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 85 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 172 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 143 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 160 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 165 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 158 bp overlap
ChIP HepG2 ENCFF757EKU 212 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 212 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 212 bp overlap
ChIP Kasumi-1_siRE GSE121280.CTCF.Kasumi-1_siRE 113 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 142 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 160 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 181 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 211 bp overlap
ChIP MCF-7 ENCFF414SZG 186 bp overlap
ChIP MCF-7 ENCFF424NQR 184 bp overlap
ChIP MCF-7 ENCFF494VXA 212 bp overlap
ChIP MCF-7 ENCFF844STM 187 bp overlap
ChIP MCF-7 ENCFF954TUV 181 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 196 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 181 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 191 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 74 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 154 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 199 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 212 bp overlap
ChIP PC-3 ENCFF487TUI 212 bp overlap
ChIP Panc1 ENCFF056JQX 212 bp overlap
ChIP Panc1 ENCFF056JQX 212 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 187 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 195 bp overlap
ChIP RWPE2 ENCFF911IEE 212 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 129 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 173 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 212 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 196 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 116 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 165 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 145 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 186 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 196 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 110 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 183 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 142 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 158 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 140 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 120 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 152 bp overlap
ChIP VCaP ENCFF858YQT 212 bp overlap
ChIP VCaP ENCFF858YQT 212 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 212 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 97 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 195 bp overlap
ChIP ascending aorta ENCFF451CCT 212 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 212 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 162 bp overlap
ChIP bronchial epithelial cell ENCFF500SEA 212 bp overlap
ChIP chondrocyte ENCFF134ORZ 178 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 212 bp overlap
ChIP endodermal cell ENCFF471YCZ 212 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 169 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 212 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 212 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 212 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 212 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 212 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 212 bp overlap
ChIP heart right ventricle ENCFF435TKW 212 bp overlap
ChIP heart right ventricle ENCFF577TID 212 bp overlap
ChIP heart right ventricle ENCFF725NNJ 212 bp overlap
ChIP heart right ventricle ENCFF979TCT 212 bp overlap
ChIP hepatocyte ENCFF263BLJ 212 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 146 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 212 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 128 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 181 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 155 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 180 bp overlap
ChIP keratinocyte ENCFF667ULX 212 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 137 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 105 bp overlap
ChIP kidney epithelial cell ENCFF173LWY 212 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 209 bp overlap
ChIP neural crest cell ENCFF182LWK 212 bp overlap
ChIP neural progenitor cell ENCFF420RBO 205 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 182 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 164 bp overlap
ChIP osteocyte ENCFF929FPD 212 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 148 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 177 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 212 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 212 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 212 bp overlap
ChIP right atrium auricular region ENCFF696NTN 212 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 212 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
GLI3 1 dataset
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
RAD21 25 datasets
ChIP GM12878 ENCFF046CBW 189 bp overlap
ChIP GM12878 ENCFF101UQZ 185 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 144 bp overlap
ChIP H1 ENCFF698EWO 211 bp overlap
ChIP H1 ENCFF967OJF 200 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 212 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 121 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.RAD21.HEC-1-B_RF-insertion 139 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 130 bp overlap
ChIP Ishikawa ENCFF570JVV 212 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 128 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 190 bp overlap
ChIP SK-N-SH ENCFF747MAS 212 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 212 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 212 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 141 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 188 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 116 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-030m-Flavo-000m 212 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 195 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 126 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 184 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 187 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 127 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 118 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 212 bp overlap
SMC3 1 dataset
ChIP GM12878 ENCFF085RLZ 212 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 118 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 146 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
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