chr13 : 59,845,340 59,845,954
614 bp 29 TFs 0 linked genes
This 614 bp open chromatin element has no linked target genes and is bound by 29 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:59,840,340 – 59,850,954
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 398 bp overlap
CDX2 3 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 403 bp overlap
ChIP LS180 GSE31939.CDX2.LS180 362 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 235 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 375 bp overlap
ERG 1 dataset
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 374 bp overlap
ESR1 5 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 234 bp overlap
ChIP MCF-7 GSE95302.ESR1.MCF-7 266 bp overlap
ChIP MCF-7_RAD001 GSE103023.ESR1.MCF-7_RAD001 179 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 174 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 364 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 179 bp overlap
FOXA1 2 datasets
ChIP LS180 GSE140533.FOXA1.LS180 395 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 249 bp overlap
FOXA2 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 335 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 99 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 332 bp overlap
ChIP DE DE-FOXA2-1 543 bp overlap
ChIP DE DE-FOXA2-2 568 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 221 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 288 bp overlap
GATA2 1 dataset
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 208 bp overlap
GATA3 4 datasets
ChIP MCF-7 GSE122847.GATA3.MCF-7 213 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 237 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 245 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 299 bp overlap
GATA4 8 datasets
ChIP A-549 GSE85002.GATA4.A-549 300 bp overlap
ChIP DE DE-GATA4-1 612 bp overlap
ChIP DE DE-GATA4-2 614 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 375 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 471 bp overlap
ChIP foregut GSE117136.GATA4.foregut 285 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 449 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 344 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 434 bp overlap
ChIP AGS GSE51936.GATA6.AGS 83 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 447 bp overlap
ChIP DE DE-GATA6-1 373 bp overlap
ChIP DE DE-GATA6-2 614 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 481 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 424 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 454 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 424 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 246 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 294 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 550 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 462 bp overlap
ChIP foregut GSE117136.GATA6.foregut 261 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 380 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 320 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 225 bp overlap
ChIP HepG2 ENCFF854JLR 245 bp overlap
HNF4A 3 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 299 bp overlap
ChIP Caco-2_PROLIF GSE23436.HNF4A.Caco-2_PROLIF 106 bp overlap
ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 373 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 174 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 174 bp overlap
NFIL3 1 dataset
ChIP HepG2 ENCFF686VLI 337 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 170 bp overlap
RARA 1 dataset
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 294 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 163 bp overlap
RXR 2 datasets
ChIP LS180_125 GSE31939.RXR.LS180_125 114 bp overlap
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 198 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 410 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 246 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 296 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 548 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 185 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 212 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 207 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 176 bp overlap