chr13 : 55,230,355 – 55,230,796
441 bp 35 TFs 0 linked genes
This 441 bp open chromatin element has no linked target genes and is bound by 35 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:55,225,355 – 55,235,796
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
35 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 318 bp overlap
BRD4 1 dataset
ChIP T-47D_DMSO GSE63581.BRD4.T-47D_DMSO 200 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 226 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 160 bp overlap
CTCF 90 datasets
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 207 bp overlap
ChIP C4-2B ENCFF821XVN 441 bp overlap
ChIP C4-2B ENCFF821XVN 268 bp overlap
ChIP Caco-2 ENCFF934QYS 183 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 123 bp overlap
ChIP GM23338 ENCFF531QOI 236 bp overlap
ChIP GM23338 ENCFF772DML 161 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 171 bp overlap
ChIP H1 ENCFF414GZI 193 bp overlap
ChIP H1 ENCFF764RHO 208 bp overlap
ChIP H9 ENCFF152GTF 256 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 268 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 168 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 185 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 143 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 194 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 214 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 242 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 193 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 213 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 295 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 249 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 119 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 148 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 138 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 279 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 301 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 150 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 134 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 129 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 219 bp overlap
ChIP MCF-7 ENCFF198DQX 206 bp overlap
ChIP MCF-7 ENCFF494VXA 206 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 274 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 174 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 169 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 122 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 173 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 217 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 143 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 171 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 284 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 198 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 352 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 228 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 360 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 139 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 256 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 159 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 167 bp overlap
ChIP T-47D_serum GSE120162.CTCF.T-47D_serum 147 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 224 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 161 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 164 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 166 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 140 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 195 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 157 bp overlap
ChIP VCaP ENCFF858YQT 396 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 322 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 178 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 154 bp overlap
ChIP endodermal cell ENCFF471YCZ 257 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 376 bp overlap
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 181 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 428 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 362 bp overlap
ChIP hESC_PRIMED GSE69646.CTCF.hESC_PRIMED 285 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 268 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 172 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 168 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 148 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 225 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 195 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 142 bp overlap
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 137 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 196 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 240 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 204 bp overlap
ChIP keratinocyte ENCFF667ULX 226 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 266 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 168 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 199 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 176 bp overlap
ChIP neural progenitor cell ENCFF420RBO 161 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 242 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 151 bp overlap
ChIP placenta ENCFF029PHY 310 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 192 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 217 bp overlap
CTCFL 2 datasets
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 184 bp overlap
ChIP OVCAR-8 GSE70764.CTCFL.OVCAR-8 320 bp overlap
DMRTA1 1 dataset
Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap
DMRTC2 1 dataset
Motif DE_12h DE_12h-DMRTC2_MA1479.2 11 bp overlap
ESR1 8 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 88 bp overlap
ChIP MCF-7 GSE119057.ESR1.MCF-7 194 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 196 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 203 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 188 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 181 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 176 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 163 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 1 dataset
ChIP ESC S34-ESC-d0-JUN-exp2 90 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 441 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 413 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 280 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 186 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 55 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 361 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 140 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 383 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 87 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RAD21 29 datasets
ChIP H1 ENCFF698EWO 177 bp overlap
ChIP H1 ENCFF967OJF 89 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 242 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 276 bp overlap
ChIP Ishikawa ENCFF570JVV 197 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 148 bp overlap
ChIP MCF-7 ENCFF724VCQ 220 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 239 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 195 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 186 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 169 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 156 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 213 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 199 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 218 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 202 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-045m-Flavo-000m 194 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 248 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 258 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 260 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 189 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 233 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 172 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 219 bp overlap
ChIP hiPSC_IID12 GSE106870.RAD21.hiPSC_IID12 127 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 259 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 191 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 220 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 193 bp overlap
RARA::RXRG 1 dataset
Motif DE_12h DE_12h-RARARXRG_MA1149.2 17 bp overlap
RFX7 1 dataset
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 134 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 199 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 245 bp overlap
SMC1 1 dataset
ChIP MCF-10A GSE101921.SMC1.MCF-10A 213 bp overlap
SMC1A 2 datasets
ChIP MCF-7 GSE76893.SMC1A.MCF-7 146 bp overlap
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 161 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 96 bp overlap
STAG1 5 datasets
ChIP CHRF28811 ERP008568.STAG1.CHRF28811 164 bp overlap
ChIP HeLa GSE126990.STAG1.HeLa 407 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 407 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 232 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 140 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 105 bp overlap
TFAP4::ETV1 1 dataset
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 264 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 192 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
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