chr13 : 48,590,517 48,590,820
303 bp 29 TFs 1 linked gene
This 303 bp open chromatin element is linked to LINC00462 and is bound by 29 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00462 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:48,585,517 – 48,595,820
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
AR 1 dataset
ChIP epididymis_HEE_R1881 GSE109061.AR.epididymis_HEE_R1881 91 bp overlap
ARID1A 2 datasets
ChIP RMG-I GSE120058.ARID1A.RMG-I 303 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 194 bp overlap
BRD4 2 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 64 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 108 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 68 bp overlap
CHD2 1 dataset
ChIP K562 ENCFF857WME 266 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 115 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 129 bp overlap
ESR1 1 dataset
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 70 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 282 bp overlap
ChIP DE DE-GATA4-2 303 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 285 bp overlap
ChIP DE DE-GATA6-2 303 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 248 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 303 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 260 bp overlap
KLF5 1 dataset
ChIP ESO-26 GSE132680.KLF5.ESO-26 85 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 303 bp overlap
ChIP K562 ENCFF320EQC 303 bp overlap
MAX 1 dataset
ChIP NB4 ENCFF966MWB 195 bp overlap
MED1 1 dataset
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 303 bp overlap
NCAPH2 2 datasets
ChIP RMG-I GSE120058.NCAPH2.RMG-I 301 bp overlap
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 134 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 303 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 303 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 119 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 153 bp overlap
POLR2A 3 datasets
ChIP GM10847 ENCFF241PBX 129 bp overlap
ChIP GM12878 ENCFF263VRI 299 bp overlap
ChIP GM18526 ENCFF599EPS 169 bp overlap
SETDB1 1 dataset
ChIP HepG2 ENCFF878HLP 295 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 235 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 303 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 303 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 213 bp overlap
SPI1 3 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 283 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 138 bp overlap
ChIP K562 ENCFF410ORC 180 bp overlap
SPIB 2 datasets
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 198 bp overlap
ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 244 bp overlap
TRIM24 1 dataset
ChIP MOLM-13_IACS-9571 GSE100571.TRIM24.MOLM-13_IACS-9571 149 bp overlap
ZNF501 1 dataset
ChIP HepG2 ENCFF879XZR 303 bp overlap
ZNF670 1 dataset
ChIP HepG2 ENCFF684IKN 103 bp overlap