chr12 : 69,170,145 69,170,803
658 bp 33 TFs 3 linked genes
This 658 bp open chromatin element is linked to CPSF6, YEATS4, and FRS2 and is bound by 33 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
CPSF6 69.1 kb Distal Multiome+HiCAR
YEATS4 189.3 kb Distal Multiome
FRS2 299.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:69,165,145 – 69,175,803
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
33 transcription factors
Source
Cell type
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 208 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 240 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 297 bp overlap
ESR1 1 dataset
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 129 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 444 bp overlap
ChIP DE DE-FOXA2-2 269 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
GATA2 1 dataset
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 505 bp overlap
ChIP DE DE-GATA4-2 430 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 413 bp overlap
ChIP DE DE-GATA6-2 564 bp overlap
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 531 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 579 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 471 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 543 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 561 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 467 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 358 bp overlap
Gata3 1 dataset
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 248 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 427 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 90 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 203 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 101 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 166 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 408 bp overlap
RNF2 1 dataset
ChIP K-562 ENCSR820GND.RNF2.K-562 281 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 186 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 658 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 658 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 506 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 517 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 658 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 455 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 657 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 658 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 145 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 300 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 371 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 291 bp overlap
TRPS1 1 dataset
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
USF1 1 dataset
ChIP K-562 ENCSR000BKT.USF1.K-562 127 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 417 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 283 bp overlap
ZNF22 1 dataset
ChIP HEK293 GSE76494.ZNF22.HEK293 103 bp overlap
ZNF770 2 datasets
ChIP HEK293 ENCFF468FCG 247 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 228 bp overlap