chr12 : 21,001,877 21,002,106
229 bp 34 TFs 0 linked genes
This 229 bp open chromatin element has no linked target genes and is bound by 34 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:20,996,877 – 21,007,106
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
CTCF 39 datasets
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 229 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 229 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP GM23338 ENCFF531QOI 229 bp overlap
ChIP GM23338 ENCFF772DML 191 bp overlap
ChIP H1 ENCFF230QSV 157 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 215 bp overlap
ChIP H9 ENCFF152GTF 206 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 176 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 170 bp overlap
ChIP HCT116 ENCFF209YMI 214 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 137 bp overlap
ChIP HEK293 ENCFF498RMM 229 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 153 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 192 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 210 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 229 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 229 bp overlap
ChIP HeLa-S3 ENCFF626XQK 217 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 102 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 182 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 168 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 111 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 171 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 206 bp overlap
ChIP MCF-7 ENCFF414SZG 179 bp overlap
ChIP NB4 ENCFF155DNY 218 bp overlap
ChIP OCI-LY1 ENCFF455ESK 229 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 207 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 201 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 95 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 135 bp overlap
ChIP endodermal cell ENCFF471YCZ 229 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 167 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 136 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 137 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 186 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 229 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 131 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 151 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
ETV6 1 dataset
Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 229 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 226 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SMAD3 1 dataset
Motif DE_12h DE_12h-SMAD3_MA0795.1 10 bp overlap
SMAD5 1 dataset
Motif DE_12h DE_12h-SMAD5_MA1557.1 10 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 229 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 71 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 201 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Spz1 1 dataset
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap