chr11 : 99,117,701 – 99,117,924
223 bp 24 TFs 0 linked genes
This 223 bp open chromatin element has no linked target genes and is bound by 24 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:99,112,701 – 99,122,924
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
ATF4 1 dataset
Motif DE_12h DE_12h-ATF4_MA0833.3 10 bp overlap
BRD4 1 dataset
ChIP HeLa GSE51633.BRD4.HeLa 101 bp overlap
CEBPG 1 dataset
Motif DE_12h DE_12h-CEBPG_MA1636.2 10 bp overlap
CTCF 117 datasets
ChIP 22Rv1 ENCFF466OXN 223 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 223 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 223 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 223 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 223 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 223 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 179 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 223 bp overlap
ChIP A673 ENCFF123WOM 223 bp overlap
ChIP A673 ENCFF123WOM 115 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 183 bp overlap
ChIP C4-2B ENCFF821XVN 223 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 193 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP FT282_EV GSE131931.CTCF.FT282_EV 201 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 223 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 173 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 203 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 221 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 192 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 126 bp overlap
ChIP GM12864 ENCFF357DQE 223 bp overlap
ChIP GM23338 ENCFF531QOI 223 bp overlap
ChIP GM23338 ENCFF772DML 92 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 223 bp overlap
ChIP H9 ENCFF152GTF 218 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 220 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 223 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 176 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 203 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 163 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 223 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 223 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 223 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 223 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 217 bp overlap
ChIP HEK293 ENCFF498RMM 223 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 182 bp overlap
ChIP HMS001 GSE143026.CTCF.HMS001 102 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 160 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 223 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 223 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 223 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 223 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 223 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 195 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 223 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 223 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 223 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 223 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 156 bp overlap
ChIP HeLa-S3 ENCSR000DLO.CTCF.HeLa-S3 90 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 223 bp overlap
ChIP HeLa-S3_unsynchro GSE108173.CTCF.HeLa-S3_unsynchro 195 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 199 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 196 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 168 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 177 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 111 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 223 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 218 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 157 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 128 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 153 bp overlap
ChIP K-562_RF2-mutation GSE140868.CTCF.K-562_RF2-mutation 177 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 181 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 223 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 183 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 113 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 223 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 190 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 223 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 223 bp overlap
ChIP PC-3 ENCFF487TUI 223 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 223 bp overlap
ChIP Panc1 ENCFF056JQX 223 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 223 bp overlap
ChIP RWPE2 ENCFF911IEE 223 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 146 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 103 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 199 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 98 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 212 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 143 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 179 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 213 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 182 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 158 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 181 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 170 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 185 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 222 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 163 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 193 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 139 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 223 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 144 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 223 bp overlap
ChIP endodermal cell ENCFF471YCZ 223 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 204 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 223 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 206 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 220 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 169 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 194 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 180 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 203 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 164 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 199 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 215 bp overlap
ChIP neural progenitor cell ENCFF420RBO 223 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 218 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 128 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF680YXW 220 bp overlap
IRF4 2 datasets
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 101 bp overlap
ChIP NCI-H929 GSE142493.IRF4.NCI-H929 92 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 177 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYCN 1 dataset
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 92 bp overlap
PRDM1 1 dataset
Motif ES_0h ES_0h-PRDM1_MA0508.4 7 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RAD21 10 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 113 bp overlap
ChIP H1 ENCFF698EWO 194 bp overlap
ChIP H1 ENCFF967OJF 207 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 166 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 113 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 91 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 172 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 153 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-045m-Flavo-000m 84 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 223 bp overlap
Runx1 1 dataset
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
SIX2 1 dataset
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 200 bp overlap
SMC3 5 datasets
ChIP HeLa GSE126990.SMC3.HeLa 222 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 222 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 222 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 179 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 186 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 223 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 223 bp overlap
STAT1::STAT2 1 dataset
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
USF1 1 dataset
Motif ES_0h ES_0h-USF1_MA0093.4 10 bp overlap
YY1 2 datasets
ChIP K-562 ENCSR000BMH.YY1.K-562 133 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 145 bp overlap
ZIM3 1 dataset
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 196 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 190 bp overlap
ZNF75A 1 dataset
Motif ES_0h ES_0h-ZNF75A_MA2097.1 12 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 203 bp overlap
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