chr1 : 193,520,037 – 193,520,209
172 bp 26 TFs 0 linked genes
This 172 bp open chromatin element has no linked target genes and is bound by 26 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:193,515,037 – 193,525,209
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 107 bp overlap
ARNT::HIF1A 1 dataset
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 172 bp overlap
CREB3L4 1 dataset
Motif DE_12h DE_12h-CREB3L4_MA1475.2 9 bp overlap
CTCF 163 datasets
ChIP AG09309 ENCFF478XPS 172 bp overlap
ChIP AG10803 ENCFF549AQK 172 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 172 bp overlap
ChIP C4-2B ENCFF821XVN 172 bp overlap
ChIP Caco-2 ENCFF753NZV 172 bp overlap
ChIP Caco-2 ENCFF934QYS 172 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 154 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 125 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 172 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 156 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 101 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 133 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 161 bp overlap
ChIP GM12872 ENCFF697BYI 172 bp overlap
ChIP GM12873 ENCFF711LOS 172 bp overlap
ChIP GM12878 ENCFF635MMB 172 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 154 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 119 bp overlap
ChIP GM23338 ENCFF531QOI 172 bp overlap
ChIP GM23338 ENCFF772DML 117 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 172 bp overlap
ChIP H1 ENCFF764RHO 172 bp overlap
ChIP H9 ENCFF152GTF 172 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 172 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 172 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 172 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 172 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 172 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 162 bp overlap
ChIP Hep-G2 GSE111000.CTCF.Hep-G2 172 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 172 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 172 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 172 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 164 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 151 bp overlap
ChIP HepG2 ENCFF127KUP 172 bp overlap
ChIP HepG2 ENCFF194VBQ 145 bp overlap
ChIP HepG2 ENCFF348BUL 122 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP HepG2 ENCFF757EKU 172 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 172 bp overlap
ChIP Jurkat GSE130140.CTCF.Jurkat 171 bp overlap
ChIP Jurkat_GSI3d GSE130140.CTCF.Jurkat_GSI3d 152 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 172 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 172 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 157 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 168 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 165 bp overlap
ChIP K-562 GSE110681.CTCF.K-562 124 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 119 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 164 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 159 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 172 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 132 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 164 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 172 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 157 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 172 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 172 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 172 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 172 bp overlap
ChIP K-562_CRISPRk_N4293 GSE131349.CTCF.K-562_CRISPRk_N4293 101 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 172 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 114 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 146 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 172 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 172 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 172 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 172 bp overlap
ChIP K562 ENCFF082GOI 172 bp overlap
ChIP K562 ENCFF400DFR 172 bp overlap
ChIP K562 ENCFF430KTH 172 bp overlap
ChIP K562 ENCFF430KTH 111 bp overlap
ChIP K562 ENCFF598YSU 172 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 172 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 148 bp overlap
ChIP LNCAP ENCFF223HIG 131 bp overlap
ChIP LNCAP ENCFF700QXT 131 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 172 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 119 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 154 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 154 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 172 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 169 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 172 bp overlap
ChIP MCF-7 ENCFF139NQI 172 bp overlap
ChIP MCF-7 ENCFF162GNE 157 bp overlap
ChIP MCF-7 ENCFF198DQX 172 bp overlap
ChIP MCF-7 ENCFF210JUZ 172 bp overlap
ChIP MCF-7 ENCFF414SZG 151 bp overlap
ChIP MCF-7 ENCFF424NQR 160 bp overlap
ChIP MCF-7 ENCFF494VXA 172 bp overlap
ChIP MCF-7 ENCFF844STM 159 bp overlap
ChIP MCF-7 ENCFF954TUV 163 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 172 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 172 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 172 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 172 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 172 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 172 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 172 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 172 bp overlap
ChIP MCF-7L_TAMR GSE108787.CTCF.MCF-7L_TAMR 172 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 172 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 172 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 172 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 172 bp overlap
ChIP MCF-7L_t4 GSE108787.CTCF.MCF-7L_t4 172 bp overlap
ChIP MCF-7_1118 GSE124667.CTCF.MCF-7_1118 133 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 161 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.CTCF.MCF-7_E2_SHCTCF 164 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 172 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 150 bp overlap
ChIP MCF-7_tamoxifen-resistant GSE118711.CTCF.MCF-7_tamoxifen-resistant 166 bp overlap
ChIP NCI-H929 ENCFF305JAB 150 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 172 bp overlap
ChIP OCI-LY1 ENCFF455ESK 172 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 172 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 172 bp overlap
ChIP PC-3 ENCFF487TUI 172 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 172 bp overlap
ChIP Panc1 ENCFF056JQX 172 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 172 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 172 bp overlap
ChIP SK-N-SH ENCFF575DMG 172 bp overlap
ChIP SK-N-SH ENCFF731NJX 172 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 162 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 164 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 97 bp overlap
ChIP SiHa GSE143026.CTCF.SiHa 138 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 172 bp overlap
ChIP T-47D ENCSR000BNO.CTCF.T-47D 141 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 172 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 172 bp overlap
ChIP T-47D_NaCl-1h GSE111923.CTCF.T-47D_NaCl-1h 172 bp overlap
ChIP T-47D_NaCl-30min GSE111923.CTCF.T-47D_NaCl-30min 169 bp overlap
ChIP T-47D_NaCl-7-5min GSE111923.CTCF.T-47D_NaCl-7-5min 172 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 172 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 172 bp overlap
ChIP T-47D_serum GSE120162.CTCF.T-47D_serum 164 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 172 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 151 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 133 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 172 bp overlap
ChIP WI-38 ENCSR000DYB.CTCF.WI-38 160 bp overlap
ChIP WI38 ENCFF841AXJ 172 bp overlap
ChIP WTC11 ENCFF658QVH 172 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 106 bp overlap
ChIP endodermal cell ENCFF471YCZ 172 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 116 bp overlap
ChIP fibroblast_VILLOUS_MESENCHYME ENCSR000DVQ.CTCF.fibroblast_VILLOUS_MESENCHYME 161 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 172 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 172 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 172 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 158 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 121 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 165 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 121 bp overlap
ChIP placenta ENCFF029PHY 172 bp overlap
ChIP placenta ENCFF029PHY 114 bp overlap
ESR1 10 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 172 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 172 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 172 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 172 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 172 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 172 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 172 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 172 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 172 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 172 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXO3 1 dataset
ChIP Hep-G2 GSE97661.FOXO3.Hep-G2 111 bp overlap
GABPA 1 dataset
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 111 bp overlap
HMGXB4 1 dataset
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 172 bp overlap
IRF4 1 dataset
ChIP NCI-H929 GSE56857.IRF4.NCI-H929 97 bp overlap
JUN 1 dataset
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 172 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 172 bp overlap
Plagl1 1 dataset
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
RAD21 28 datasets
ChIP H1 ENCFF698EWO 172 bp overlap
ChIP H1 ENCFF967OJF 172 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 172 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 172 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 168 bp overlap
ChIP Hep-G2 ERP000209.RAD21.Hep-G2 172 bp overlap
ChIP HepG2 ENCFF360ZSW 81 bp overlap
ChIP HepG2 ENCFF906QIS 144 bp overlap
ChIP HepG2 ENCFF963UBJ 172 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 120 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 100 bp overlap
ChIP K562 ENCFF169SQI 158 bp overlap
ChIP K562 ENCFF634XYR 172 bp overlap
ChIP MCF-7 ENCFF694KOM 94 bp overlap
ChIP MCF-7 ENCFF724VCQ 74 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 172 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 172 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 172 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 172 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 172 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 149 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.RAD21.MCF-7_E2_SHCTCF 122 bp overlap
ChIP SK-N-SH ENCFF747MAS 172 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 163 bp overlap
ChIP T-47D_triptolide GSE111923.RAD21.T-47D_triptolide 172 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 172 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 172 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 172 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 172 bp overlap
SMC1A 4 datasets
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 172 bp overlap
ChIP MCF-7 GSE115602.SMC1A.MCF-7 172 bp overlap
ChIP MCF-7 GSE76893.SMC1A.MCF-7 172 bp overlap
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 172 bp overlap
SMC3 4 datasets
ChIP Hep-G2 ENCSR000EDW.SMC3.Hep-G2 172 bp overlap
ChIP HepG2 ENCFF745UAV 172 bp overlap
ChIP SK-N-SH ENCFF791WFB 172 bp overlap
ChIP SK-N-SH ENCSR000EHW.SMC3.SK-N-SH 124 bp overlap
STAG1 6 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 172 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 170 bp overlap
ChIP HepG2 ENCFF843EBZ 172 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 172 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 165 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 126 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
TRIM22 1 dataset
ChIP MCF-7 ENCSR875PEI.TRIM22.MCF-7 172 bp overlap
ZBTB2 1 dataset
ChIP Hep-G2 GSE97661.ZBTB2.Hep-G2 166 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF143 1 dataset
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 126 bp overlap
ZNF264 2 datasets
ChIP Hep-G2 ENCSR248BVU.ZNF264.Hep-G2 92 bp overlap
ChIP HepG2 ENCFF453WJV 98 bp overlap
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