chr1 : 190,479,684 – 190,479,827
143 bp 25 TFs 2 linked genes
This 143 bp open chromatin element is linked to BRINP3-DT and BRINP3 and is bound by 25 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BRINP3-DT 1.1 kb Proximal Proximity
BRINP3 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:190,474,684 – 190,484,827
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
25 transcription factors
Source
Cell type
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 143 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 134 bp overlap
BRD4 4 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 143 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 143 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 143 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 143 bp overlap
CTCF 131 datasets
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 143 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 143 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 143 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 128 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 143 bp overlap
ChIP A673 ENCFF123WOM 143 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 143 bp overlap
ChIP BE2C ENCFF757SRF 143 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 143 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 123 bp overlap
ChIP D721Med ENCFF513FYD 143 bp overlap
ChIP GM23338 ENCFF531QOI 143 bp overlap
ChIP GM23338 ENCFF772DML 143 bp overlap
ChIP H1 ENCFF764RHO 143 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 143 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 143 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 143 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 143 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 143 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 143 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 143 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 143 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 124 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 143 bp overlap
ChIP HCT116 ENCFF003KHP 143 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 143 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 143 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 143 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 112 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 143 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 93 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 143 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 143 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 129 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 105 bp overlap
ChIP K-562_RF2-mutation GSE140868.CTCF.K-562_RF2-mutation 143 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 143 bp overlap
ChIP K-562_WT GSE140868.CTCF.K-562_WT 115 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 82 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 143 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 143 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 143 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 127 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 143 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 143 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 143 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 143 bp overlap
ChIP MCF-7 ENCFF198DQX 143 bp overlap
ChIP MCF-7 ENCFF494VXA 143 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 143 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 143 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 143 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 143 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 130 bp overlap
ChIP Panc1 ENCFF056JQX 143 bp overlap
ChIP Peyer's patch ENCFF746TCR 143 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 143 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 143 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 143 bp overlap
ChIP SK-N-SH ENCFF731NJX 143 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 107 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 98 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 143 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 121 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 143 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 130 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 127 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 143 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 143 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 133 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 143 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 143 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 143 bp overlap
ChIP THP-1_siWAPL-NS1-Pam3csk-4h GSE103477.CTCF.THP-1_siWAPL-NS1-Pam3csk-4h 121 bp overlap
ChIP VCaP ENCFF858YQT 143 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 143 bp overlap
ChIP VCaP_ETOH GSE84432.CTCF.VCaP_ETOH 98 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 131 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 93 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 143 bp overlap
ChIP brain ENCFF685VRG 143 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 143 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 143 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 143 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF041CKA 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF046GNG 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF255MAF 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF258PHG 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277YTN 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF327VLN 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF354RKX 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF483ZLP 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF595WAL 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF677SUG 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF851XUX 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF883PFA 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF896AZK 143 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 143 bp overlap
ChIP esophagus muscularis mucosa ENCFF045JBW 143 bp overlap
ChIP esophagus muscularis mucosa ENCFF544GAS 143 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR443WKD.CTCF.esophagus-muscularis-mucosa 143 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 143 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR353DFU.CTCF.esophagus_muscularis-mucosa 143 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 143 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 143 bp overlap
ChIP heart left ventricle ENCFF548XHH 143 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 143 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 137 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 109 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 100 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 136 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 143 bp overlap
ChIP neural cell ENCFF335ADI 143 bp overlap
ChIP neural progenitor cell ENCFF420RBO 143 bp overlap
ChIP neural progenitor cell ENCFF581WPG 143 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 141 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 141 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 94 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 143 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 136 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA1 1 dataset
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 97 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
HMGA1 1 dataset
ChIP IMR-90_RAS-induced GSE111841.HMGA1.IMR-90_RAS-induced 106 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 86 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE94782.MYCN.NB-1643 127 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL4-SET-KO_ab834 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab834 129 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 143 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 88 bp overlap
RAD21 22 datasets
ChIP H1 ENCFF698EWO 143 bp overlap
ChIP H1 ENCFF967OJF 143 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 143 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 143 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 143 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 143 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 143 bp overlap
ChIP HCT116 ENCFF568PEO 143 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 131 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 121 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 117 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 124 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 142 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 143 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 138 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 118 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 108 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-120m-Flavo-000m 131 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 120 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 143 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 119 bp overlap
ChIP neural cell ENCFF564MOT 143 bp overlap
RNF2 1 dataset
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 56 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 143 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 143 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 143 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 92 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 143 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 133 bp overlap
SMC3 5 datasets
ChIP HeLa GSE126990.SMC3.HeLa 99 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 110 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 103 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 143 bp overlap
ChIP neural cell ENCFF795YGY 143 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 143 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 143 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 143 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF354C 1 dataset
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
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