chr9 : 117,535,345 – 117,535,732
387 bp 29 TFs 0 linked genes
This 387 bp open chromatin element has no linked target genes and is bound by 29 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:117,530,345 – 117,540,732
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
CTCF 136 datasets
ChIP BE2C ENCFF757SRF 247 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 188 bp overlap
ChIP Caco-2 ENCFF934QYS 195 bp overlap
ChIP Caco-2 ENCSR000DQN.CTCF.Caco-2 122 bp overlap
ChIP D721Med ENCFF513FYD 192 bp overlap
ChIP DND-41 ENCFF913MRA 233 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 192 bp overlap
ChIP DOHH2 ENCFF637WNW 379 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 315 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 191 bp overlap
ChIP GM23338 ENCFF531QOI 133 bp overlap
ChIP GM23338 ENCFF772DML 99 bp overlap
ChIP H1 ENCFF414GZI 197 bp overlap
ChIP H1 ENCFF764RHO 97 bp overlap
ChIP H9 ENCFF152GTF 235 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 258 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 210 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 164 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 226 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 254 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 295 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 227 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 159 bp overlap
ChIP HEK293 ENCFF498RMM 220 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 177 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 115 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 270 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 212 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 148 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 116 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 168 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 145 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 113 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 148 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 183 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 180 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 200 bp overlap
ChIP Loucy ENCFF359TVQ 368 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 305 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 180 bp overlap
ChIP MCF-7 ENCFF139NQI 229 bp overlap
ChIP MCF-7 ENCFF198DQX 222 bp overlap
ChIP MCF-7 ENCFF494VXA 222 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 181 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 170 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 132 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 188 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 103 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 181 bp overlap
ChIP NPC GSE115407.CTCF.NPC 239 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 301 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 232 bp overlap
ChIP VCaP ENCFF858YQT 387 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 230 bp overlap
ChIP VCaP_ETOH GSE84432.CTCF.VCaP_ETOH 142 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 218 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 151 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 205 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 192 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 197 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 190 bp overlap
ChIP body of pancreas ENCFF438KTE 321 bp overlap
ChIP body of pancreas ENCFF798MEO 83 bp overlap
ChIP brain ENCFF099ASU 387 bp overlap
ChIP brain ENCFF163BBN 387 bp overlap
ChIP brain ENCFF685VRG 387 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 298 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 182 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 217 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 190 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 178 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 217 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF038KTR 234 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF149PUN 312 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 265 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 316 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 346 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 309 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF311KBD 306 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 375 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF394MUG 307 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF403LNW 348 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 367 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 387 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF442YDO 285 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 387 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF514PNC 320 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF562MJV 353 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF595WAL 370 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 300 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 335 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 315 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696JOF 377 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 324 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 332 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF749FBO 302 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 387 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 221 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 383 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF841TWE 302 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF883PFA 299 bp overlap
ChIP endodermal cell ENCFF471YCZ 245 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 251 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 169 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 186 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 192 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 257 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 276 bp overlap
ChIP hepatocyte ENCFF263BLJ 262 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 192 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 189 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 134 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 163 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 155 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 203 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 194 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 167 bp overlap
ChIP islet ERP004003.CTCF.islet 140 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 193 bp overlap
ChIP medulloblastoma ENCSR000DMY.CTCF.medulloblastoma 121 bp overlap
ChIP nephron progenitor cell ENCFF455DMI 348 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 385 bp overlap
ChIP neural cell ENCFF335ADI 276 bp overlap
ChIP neural progenitor cell ENCFF420RBO 224 bp overlap
ChIP neural progenitor cell ENCFF581WPG 387 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 270 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 183 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 102 bp overlap
ChIP pancreas_body ENCSR307PFP.CTCF.pancreas_body 233 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 220 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 300 bp overlap
ChIP right lobe of liver ENCFF011NDG 315 bp overlap
ChIP stomach ENCFF370OWL 288 bp overlap
ChIP stomach ENCSR173AIR.CTCF.stomach 253 bp overlap
ChIP stomach ENCSR361KVZ.CTCF.stomach 214 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXJ2::ELF1 1 dataset
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXP2 1 dataset
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 104 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 136 bp overlap
NOTCH1 1 dataset
ChIP CD34 GSE63010.NOTCH1.CD34 141 bp overlap
RAD21 18 datasets
ChIP H1 ENCFF698EWO 220 bp overlap
ChIP H1 ENCFF967OJF 224 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 196 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 148 bp overlap
ChIP HepG2 ENCFF360ZSW 209 bp overlap
ChIP HepG2 ENCFF906QIS 210 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 146 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 206 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 189 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 129 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 203 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 138 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 190 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 159 bp overlap
ChIP liver ENCFF485PAC 312 bp overlap
ChIP liver ENCFF522JHE 318 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 387 bp overlap
ChIP neural cell ENCFF564MOT 255 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 208 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 175 bp overlap
SMC3 3 datasets
ChIP HepG2 ENCFF745UAV 227 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 368 bp overlap
ChIP neural cell ENCFF795YGY 355 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
STAG1 3 datasets
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 173 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 154 bp overlap
ChIP HepG2 ENCFF843EBZ 259 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5aStat5b_MA0519.2 9 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF777 1 dataset
ChIP HEK293T GSE78099.ZNF777.HEK293T 186 bp overlap
ZNF784 1 dataset
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
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