chr9 : 98,265,141 98,265,693
552 bp 26 TFs 4 linked genes
This 552 bp open chromatin element is linked to 4 target genes and is bound by 26 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
TBC1D2 9.5 kb Proximal Proximity
CORO2A 72.9 kb Distal Multiome
NANS 208.8 kb Distal Multiome
ANP32B 282.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:98,260,141 – 98,270,693
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
26 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 147 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 281 bp overlap
ChIP BLaER1 ENCFF798NMV 75 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 162 bp overlap
ESR1 22 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 94 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 86 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 101 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 210 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 210 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 175 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 65 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 186 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 102 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 194 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 151 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 172 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 171 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 82 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 195 bp overlap
ChIP Ishikawa_EnhiE2 GSE99905.ESR1.Ishikawa_EnhiE2 74 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 141 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 186 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 161 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 76 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 213 bp overlap
ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 92 bp overlap
FIGLA 1 dataset
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 446 bp overlap
ChIP DE DE-FOXA2-2 544 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 465 bp overlap
ChIP DE DE-GATA4-2 518 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 466 bp overlap
ChIP DE DE-GATA6-2 465 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 415 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 231 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 395 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 480 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 552 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 363 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 343 bp overlap
MAFK 1 dataset
Motif DE_72h DE_72h-MAFK_MA0496.4 10 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 334 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 297 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 254 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 135 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 288 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 445 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 316 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 249 bp overlap
SNAI1 1 dataset
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
SNAI3 1 dataset
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 429 bp overlap
SREBF1 1 dataset
Motif DE_72h DE_72h-SREBF1_MA0595.1 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 274 bp overlap
TCF12 1 dataset
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
TCF3 2 datasets
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
ChIP NPC GSE154479.TCF3.NPC 175 bp overlap
TCF4 1 dataset
Motif DE_72h DE_72h-TCF4_MA0830.3 8 bp overlap
ZEB1 1 dataset
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap