chr1 : 176,922,187 176,922,428
241 bp 31 TFs 0 linked genes
This 241 bp open chromatin element has no linked target genes and is bound by 31 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:176,917,187 – 176,927,428
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 153 bp overlap
CTCF 1 dataset
ChIP hiPSC_IIIB12 GSE106870.CTCF.hiPSC_IIIB12 83 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 224 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 127 bp overlap
GATA6 8 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 241 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 241 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 241 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 241 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 241 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 241 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 241 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 241 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 241 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 82 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 134 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 241 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 226 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 240 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 149 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 241 bp overlap
RELA 1 dataset
ChIP HeLa-B2_GRKD_DMSO GSE24518.RELA.HeLa-B2_GRKD_DMSO 70 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 241 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 241 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 241 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 161 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 241 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 225 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 241 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 241 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 217 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 223 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 212 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 241 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 195 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 241 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 192 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 241 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 191 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 223 bp overlap
SPI1 1 dataset
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 134 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 241 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
ZNF770 2 datasets
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 179 bp overlap
ChIP HEK293 GSE76494.ZNF770.HEK293 97 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap