chr1 : 162,464,538 162,465,124
586 bp 39 TFs 2 linked genes
This 586 bp open chromatin element is linked to UHMK1 and UAP1 and is bound by 39 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
UHMK1 33.0 kb Distal Multiome
UAP1 97.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:162,459,538 – 162,470,124
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
39 transcription factors
Source
Cell type
AR 1 dataset
ChIP 22Rv1_shKDM3A GSE109748.AR.22Rv1_shKDM3A 311 bp overlap
BRD2 1 dataset
ChIP K-562_DMSO GSE120715.BRD2.K-562_DMSO 142 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 297 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 55 bp overlap
Dmrt1 1 dataset
Motif DE_48h DE_48h-Dmrt1_MA1603.2 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 380 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 543 bp overlap
ChIP DE DE-FOXA2-2 569 bp overlap
GATA2 1 dataset
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 586 bp overlap
ChIP DE DE-GATA4-2 586 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 265 bp overlap
GATA5 1 dataset
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 586 bp overlap
ChIP DE DE-GATA6-2 586 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 526 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 420 bp overlap
ChIP foregut GSE117136.GATA6.foregut 279 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
HOXA3 1 dataset
Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
HOXB4 1 dataset
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
NKX6-3 1 dataset
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 131 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 50 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 414 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 586 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 545 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 586 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 398 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 388 bp overlap
SOX10 1 dataset
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 427 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 565 bp overlap
Sox11 1 dataset
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 124 bp overlap
TBX20 2 datasets
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Tfcp2l1 1 dataset
Motif DE_48h DE_48h-Tfcp2l1_MA0145.2 14 bp overlap
ZNF24 2 datasets
ChIP K-562 ENCSR099NCH.ZNF24.K-562 350 bp overlap
ChIP K-562 ENCSR695EQB.ZNF24.K-562 233 bp overlap
ZNF316 2 datasets
ChIP K-562 ENCSR200JYP.ZNF316.K-562 152 bp overlap
ChIP K562 ENCFF281INV 72 bp overlap
ZNF324 1 dataset
Motif DE_48h DE_48h-ZNF324_MA1977.2 14 bp overlap
ZNF416 1 dataset
Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap