chr1 : 155,806,537 155,807,073
536 bp 15 TFs 15 linked genes
This 536 bp open chromatin element is linked to 15 target genes and is bound by 15 transcription factors.
Linked Genes
15 genes
Gene Expression Dist. to TSS Distance Link type
GON4L 50.4 kb Distal Multiome
SYT11 52.8 kb Distal Multiome
RIT1 104.6 kb Distal Multiome
DAP3 117.7 kb Distal Multiome
YY1AP1 117.8 kb Distal Multiome
KHDC4 127.6 kb Distal Multiome
ARHGEF2 171.7 kb Distal Multiome
SSR2 214.1 kb Distal Multiome
MSTO1 243.6 kb Distal Multiome
ASH1L 243.6 kb Distal Multiome
UBQLN4 247.0 kb Distal Multiome
LAMTOR2 248.0 kb Distal Multiome
RAB25 254.4 kb Distal Multiome
MEX3A 275.7 kb Distal Multiome
LMNA 307.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:155,801,537 – 155,812,073
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
15 transcription factors
Source
Cell type
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 318 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 348 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 505 bp overlap
ChIP DE DE-FOXA2-2 398 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 520 bp overlap
ChIP DE DE-GATA4-2 498 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 481 bp overlap
ChIP DE DE-GATA6-2 536 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 227 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 133 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 484 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 464 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 365 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 476 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 509 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 198 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 160 bp overlap