chr6 : 152,299,450 152,299,635
185 bp 17 TFs 1 linked gene
This 185 bp open chromatin element is linked to SYNE1 and is bound by 17 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SYNE1 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:152,294,450 – 152,304,635
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
17 transcription factors
Source
Cell type
AR 1 dataset
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 82 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 185 bp overlap
BRD4 6 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 150 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 148 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 185 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 172 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 75 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 185 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 185 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 137 bp overlap
EP300 1 dataset
ChIP neural cell ENCFF442QNK 185 bp overlap
KMT2A 1 dataset
ChIP blood_cord GSE83671.KMT2A.blood_cord 85 bp overlap
MED1 1 dataset
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 106 bp overlap
MEF2B 2 datasets
ChIP DLBCL GSE110682.MEF2B.DLBCL 109 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 150 bp overlap
POLR2A 2 datasets
ChIP Raji ENCFF613VGX 185 bp overlap
ChIP neural cell ENCFF604SPB 185 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 185 bp overlap
SPI1 2 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 98 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 72 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 185 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 185 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 92 bp overlap
STAT3 1 dataset
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 127 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 92 bp overlap
VDR 1 dataset
ChIP LS180_125 GSE31939.VDR.LS180_125 78 bp overlap