chr6 : 152,298,182 152,298,535
353 bp 24 TFs 1 linked gene
This 353 bp open chromatin element is linked to SYNE1 and is bound by 24 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SYNE1 3.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:152,293,182 – 152,303,535
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 353 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 186 bp overlap
BORCS8-MEF2B,MEF2B 1 dataset
ChIP GM12878 ENCFF427QAI 305 bp overlap
BRD4 5 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 353 bp overlap
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 319 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 353 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 156 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 217 bp overlap
CHD4 1 dataset
ChIP pre-B-cell GSE107886.CHD4.pre-B-cell 319 bp overlap
EBF1 5 datasets
ChIP GM12878 ENCFF167CZS 184 bp overlap
ChIP GM12878 ENCFF813OXE 151 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 123 bp overlap
ChIP LCL GSE75503.EBF1.LCL 234 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 220 bp overlap
EP300 1 dataset
ChIP neural ENCSR843ZUP.EP300.neural 317 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 236 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 115 bp overlap
ChIP HepG2 ENCFF854JLR 141 bp overlap
IKZF1 2 datasets
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 153 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 53 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 232 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 310 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 175 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 277 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 130 bp overlap
PML 1 dataset
ChIP GM12878 ENCFF160JQZ 353 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 138 bp overlap
RELA 3 datasets
ChIP GM12878 ENCSR664POU.RELA.GM12878 203 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 292 bp overlap
ChIP GM12891 ENCSR000EAI.RELA.GM12891 295 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 152 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 353 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 191 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 126 bp overlap
SUPT5H 1 dataset
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 104 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 114 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 353 bp overlap