chr1 : 105,072,937 – 105,073,148
211 bp 31 TFs 0 linked genes
This 211 bp open chromatin element has no linked target genes and is bound by 31 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:105,067,937 – 105,078,148
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
31 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP 501-mel GSE95280.ARNT.501-mel 102 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BRD4 2 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 147 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CTCF 134 datasets
ChIP 22Rv1 ENCFF466OXN 211 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 211 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 154 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 116 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 211 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 171 bp overlap
ChIP BE2C ENCFF757SRF 211 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 211 bp overlap
ChIP C4-2B ENCFF821XVN 211 bp overlap
ChIP C4-2B ENCFF821XVN 211 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
Motif ES_0h ES_0h-CTCF_MA1930.2 33 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 197 bp overlap
ChIP GM23338 ENCFF531QOI 211 bp overlap
ChIP GM23338 ENCFF772DML 165 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 208 bp overlap
ChIP H1 ENCFF764RHO 136 bp overlap
ChIP H9 ENCFF152GTF 211 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 200 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 211 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 158 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 211 bp overlap
ChIP HEK293 ENCFF498RMM 211 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 156 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 128 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 207 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 211 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 211 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 211 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 205 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 160 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 192 bp overlap
ChIP HeLa-S3 ENCFF255ASZ 211 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000AOA.CTCF.HeLa-S3 211 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 146 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 155 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 146 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 181 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 191 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 133 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 119 bp overlap
ChIP HepG2 ENCFF194VBQ 211 bp overlap
ChIP HepG2 ENCFF348BUL 191 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP HepG2 ENCFF757EKU 211 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 208 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 137 bp overlap
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 174 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 124 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 109 bp overlap
ChIP K-562_5635 GSE131349.CTCF.K-562_5635 116 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 135 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 140 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 211 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 193 bp overlap
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 202 bp overlap
ChIP K-562_WT GSE140868.CTCF.K-562_WT 143 bp overlap
ChIP K562 ENCFF082GOI 182 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 211 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 142 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 189 bp overlap
ChIP Kelly_shB4-res GSE115248.CTCF.Kelly_shB4-res 186 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 153 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 153 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 182 bp overlap
ChIP MCF-10A GSE98551.CTCF.MCF-10A 211 bp overlap
ChIP MCF-10AT1 GSE98551.CTCF.MCF-10AT1 211 bp overlap
ChIP MCF-10CA1a GSE98551.CTCF.MCF-10CA1a 211 bp overlap
ChIP MCF-7 ENCFF198DQX 198 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 198 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 174 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 182 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 157 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 117 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 91 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 200 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 211 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 124 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 154 bp overlap
ChIP OCI-LY1 ENCFF455ESK 181 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 211 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 194 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 210 bp overlap
ChIP PC-3 ENCFF487TUI 141 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 211 bp overlap
ChIP PC-9 ENCFF539ULB 211 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 173 bp overlap
ChIP RWPE2 ENCFF911IEE 211 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 116 bp overlap
ChIP SK-N-SH ENCFF731NJX 211 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 211 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 169 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 126 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 206 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 199 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 179 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 174 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 207 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 172 bp overlap
ChIP VCaP ENCFF858YQT 211 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 211 bp overlap
ChIP VCaP_R1881 GSE84432.CTCF.VCaP_R1881 153 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 154 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 127 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 190 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 198 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 101 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 136 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 128 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 135 bp overlap
ChIP endodermal cell ENCFF471YCZ 211 bp overlap
ChIP epithelial cell of esophagus ENCFF946GGT 211 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 160 bp overlap
ChIP epithelial_esophagus ENCSR000DTR.CTCF.epithelial_esophagus 144 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 211 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 155 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 190 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 204 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 170 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 149 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 156 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 176 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 210 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 208 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 211 bp overlap
ChIP neural progenitor cell ENCFF420RBO 207 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 211 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 192 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 211 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 136 bp overlap
ESR1 2 datasets
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 121 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 105 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 177 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
Gfi1B 2 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
KLF1 1 dataset
ChIP erythroid_R3R4 GSE43625.KLF1.erythroid_R3R4 77 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 182 bp overlap
MAFF 2 datasets
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Mafb 2 datasets
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 164 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
RAD21 31 datasets
ChIP GM12878 ENCFF101UQZ 191 bp overlap
ChIP GM12878 ENCSR000BMY.RAD21.GM12878 124 bp overlap
ChIP H1 ENCFF698EWO 133 bp overlap
ChIP H1 ENCFF967OJF 145 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 211 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 175 bp overlap
ChIP Hep-G2 ENCSR054FKH.RAD21.Hep-G2 131 bp overlap
ChIP Hep-G2 ERP000209.RAD21.Hep-G2 139 bp overlap
ChIP HepG2 ENCFF360ZSW 211 bp overlap
ChIP HepG2 ENCFF906QIS 204 bp overlap
ChIP HepG2 ENCFF963UBJ 209 bp overlap
ChIP Ishikawa ENCFF570JVV 202 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 171 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 119 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 74 bp overlap
ChIP MCF-7 ENCFF724VCQ 211 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 175 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 180 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 131 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 116 bp overlap
ChIP SK-N-SH ENCFF747MAS 211 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 177 bp overlap
ChIP THP-1_eGFP-IFNb GSE103477.RAD21.THP-1_eGFP-IFNb 184 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 211 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 194 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 129 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 188 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 160 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 170 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 184 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 180 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 99 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 143 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 211 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 193 bp overlap
SMC3 2 datasets
ChIP Hep-G2 ENCSR000EDW.SMC3.Hep-G2 176 bp overlap
ChIP HepG2 ENCFF745UAV 211 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 124 bp overlap
STAG1 7 datasets
ChIP HeLa GSE126990.STAG1.HeLa 211 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 211 bp overlap
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 197 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 190 bp overlap
ChIP HepG2 ENCFF843EBZ 211 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 177 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 141 bp overlap
STAT3 3 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 94 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
ZFP42 2 datasets
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
Motif ES_0h ES_0h-ZFP42_MA1651.2 13 bp overlap
ZNF354C 2 datasets
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap
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