chr4 : 182,091,144 – 182,091,678
534 bp 28 TFs 1 linked gene
This 534 bp open chromatin element is linked to TENM3-AS1 and is bound by 28 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TENM3-AS1 6.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:182,086,144 – 182,096,678
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
AR 13 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 126 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 150 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 142 bp overlap
ChIP prostate GSE56288.AR.prostate 80 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 203 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 115 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 195 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 321 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 277 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 158 bp overlap
ChIP prostate_P25 GSE130408.AR.prostate_P25 142 bp overlap
ChIP prostate_P27_T GSE130408.AR.prostate_P27_T 184 bp overlap
ChIP prostate_P7_T GSE130408.AR.prostate_P7_T 234 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 249 bp overlap
BRD4 2 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 307 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 151 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 264 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 408 bp overlap
ChIP BLaER1 ENCFF364PUR 267 bp overlap
FOXA1 39 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 176 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 88 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 207 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 177 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 77 bp overlap
ChIP LNCaP GSE56288.FOXA1.LNCaP 126 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 203 bp overlap
ChIP LNCaP-C4-2B_TFS GSE123618.FOXA1.LNCaP-C4-2B_TFS 177 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 161 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 220 bp overlap
ChIP LNCaP_S2101-48H GSE114266.FOXA1.LNCaP_S2101-48H 233 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 214 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 197 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 101 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 175 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 206 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 133 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 156 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 189 bp overlap
ChIP liver ENCFF749ERP 263 bp overlap
ChIP liver ERP002306.FOXA1.liver 168 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 294 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 282 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 309 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 218 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 194 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 174 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 221 bp overlap
ChIP prostate_2483 GSE130408.FOXA1.prostate_2483 202 bp overlap
ChIP prostate_2483_T GSE130408.FOXA1.prostate_2483_T 237 bp overlap
ChIP prostate_P13_T GSE130408.FOXA1.prostate_P13_T 143 bp overlap
ChIP prostate_P19 GSE130408.FOXA1.prostate_P19 238 bp overlap
ChIP prostate_P1_T GSE130408.FOXA1.prostate_P1_T 166 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 222 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 296 bp overlap
ChIP prostate_P29 GSE130408.FOXA1.prostate_P29 216 bp overlap
ChIP prostate_P29_T GSE130408.FOXA1.prostate_P29_T 331 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 251 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 299 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 534 bp overlap
ChIP DE DE-FOXA2-2 534 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 163 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 334 bp overlap
GATA4 6 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 76 bp overlap
ChIP DE DE-GATA4-1 365 bp overlap
ChIP DE DE-GATA4-2 534 bp overlap
ChIP foregut GSE117136.GATA4.foregut 325 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 373 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 459 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 472 bp overlap
ChIP DE DE-GATA6-2 489 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 323 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 442 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 341 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 534 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 393 bp overlap
ChIP foregut GSE117136.GATA6.foregut 279 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 257 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 282 bp overlap
HNF4A 2 datasets
ChIP liver ENCFF354NRH 301 bp overlap
ChIP liver ERP002306.HNF4A.liver 152 bp overlap
HOXB13 23 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 210 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 123 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 203 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 153 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 244 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 266 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 238 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 190 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 210 bp overlap
ChIP prostate_2484_T GSE130408.HOXB13.prostate_2484_T 253 bp overlap
ChIP prostate_P1 GSE130408.HOXB13.prostate_P1 205 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 285 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 248 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 191 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 192 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 313 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 246 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 93 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 268 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 212 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 271 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 296 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 307 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 262 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 228 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 126 bp overlap
REST 1 dataset
ChIP liver ENCFF240FWT 222 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 394 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 191 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 192 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 276 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 534 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 534 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 341 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 310 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 429 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 348 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 376 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 349 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 174 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 180 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 207 bp overlap
STAT3 3 datasets
ChIP MCF-7_jc5836 GSE126004.STAT3.MCF-7_jc5836 276 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 319 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 194 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 225 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 225 bp overlap
XBP1 2 datasets
ChIP LNCaP_R1881 GSE121880.XBP1.LNCaP_R1881 92 bp overlap
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 207 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 145 bp overlap
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