chr4 : 180,398,662 180,399,375
713 bp 53 TFs 0 linked genes
This 713 bp open chromatin element has no linked target genes and is bound by 53 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:180,393,662 – 180,404,375
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
Alx1 1 dataset
Motif DE_48h DE_48h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_48h DE_48h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BRD2 1 dataset
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 189 bp overlap
BRD4 2 datasets
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 308 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 258 bp overlap
BSX 1 dataset
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 266 bp overlap
CEBPA 2 datasets
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 224 bp overlap
ChIP MV4-11 GSE88746.CEBPA.MV4-11 253 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 329 bp overlap
ChIP BLaER1 ENCFF346MCV 362 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
DLX1 1 dataset
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
EBF1 1 dataset
ChIP ASC GSE54889.EBF1.ASC 148 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 267 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 482 bp overlap
ChIP DE DE-GATA4-2 582 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 520 bp overlap
ChIP DE DE-GATA6-2 648 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 263 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 713 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 523 bp overlap
GBX2 1 dataset
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
HESX1 1 dataset
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
Hand1 1 dataset
Motif DE_48h DE_48h-Hand1_MA2123.1 9 bp overlap
Hmx1 1 dataset
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
IKZF1 1 dataset
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
LBX2 1 dataset
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
MSX1 1 dataset
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
Nobox 1 dataset
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
Nr2e1 1 dataset
Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap
POU4F1 1 dataset
Motif DE_48h DE_48h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_48h DE_48h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_48h DE_48h-POU4F3_MA0791.2 12 bp overlap
RAX 1 dataset
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 305 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 303 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 450 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 337 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 556 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 253 bp overlap
ZNF16 1 dataset
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 139 bp overlap
ZNF652 1 dataset
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
ZNF93 1 dataset
Motif DE_48h DE_48h-ZNF93_MA1721.2 14 bp overlap
Zic2 1 dataset
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap