chr4 : 134,219,142 134,219,543
401 bp 41 TFs 0 linked genes
This 401 bp open chromatin element has no linked target genes and is bound by 41 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:134,214,142 – 134,224,543
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
41 transcription factors
Source
Cell type
CEBPA 1 dataset
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
CTCF 47 datasets
ChIP BC-3 GSE135740.CTCF.BC-3 195 bp overlap
ChIP GM13977 ENCFF528ESQ 171 bp overlap
ChIP GM23338 ENCFF531QOI 349 bp overlap
ChIP GM23338 ENCFF772DML 161 bp overlap
ChIP H1 ENCFF230QSV 164 bp overlap
ChIP H1 ENCFF414GZI 192 bp overlap
ChIP H1 ENCFF764RHO 269 bp overlap
ChIP H9 ENCFF152GTF 238 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 181 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 194 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 225 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 164 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 332 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 201 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 138 bp overlap
ChIP Loucy ENCFF359TVQ 373 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 219 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 192 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 113 bp overlap
ChIP OCI-LY1 ENCFF455ESK 331 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 262 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 187 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 94 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 124 bp overlap
ChIP endodermal cell ENCFF471YCZ 232 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 401 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 300 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 216 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 193 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 186 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 149 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 263 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 260 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 173 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 201 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 145 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 213 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 235 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 100 bp overlap
ChIP neural progenitor cell ENCFF420RBO 299 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 160 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 151 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 158 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 225 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 202 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
GLIS3 1 dataset
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HMGA2 1 dataset
ChIP WTC11 ENCFF535JLP 138 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
MXI1 1 dataset
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RAD21 17 datasets
ChIP H1 ENCFF698EWO 169 bp overlap
ChIP H1 ENCFF967OJF 223 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 184 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 125 bp overlap
ChIP HepG2 ENCFF906QIS 192 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 139 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 198 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 121 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 204 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 200 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 160 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 138 bp overlap
ChIP hiPSC_IID12 GSE106870.RAD21.hiPSC_IID12 127 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 201 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 185 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 177 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 246 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TBX20 1 dataset
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
TP73 1 dataset
Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN3 1 dataset
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap