chr4 : 127,352,155 – 127,353,065
910 bp 46 TFs 1 linked gene
This 910 bp open chromatin element is linked to ENSG00000287101 and is bound by 46 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000287101 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:127,347,155 – 127,358,065
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CTCF 133 datasets
ChIP 22Rv1 ENCFF466OXN 675 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 286 bp overlap
ChIP A673 ENCFF123WOM 441 bp overlap
ChIP ASC GSE21366.CTCF.ASC 160 bp overlap
ChIP BE2C ENCFF757SRF 317 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 189 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif DE_36h DE_36h-CTCF_MA1930.2 33 bp overlap
Motif DE_48h DE_48h-CTCF_MA1930.2 33 bp overlap
Motif DE_60h DE_60h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF531QOI 167 bp overlap
ChIP GM23338 ENCFF772DML 126 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 302 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 242 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 224 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 239 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 271 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 228 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 257 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 266 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 165 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 283 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 254 bp overlap
ChIP HCT-116 ENCSR000DTO.CTCF.HCT-116 132 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 303 bp overlap
ChIP HCT116 ENCFF003KHP 421 bp overlap
ChIP HFF ENCSR000DUM.CTCF.HFF 209 bp overlap
ChIP HFF-Myc ENCFF680WYR 377 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 162 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 201 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 165 bp overlap
ChIP Hep-G2 ERP000209.CTCF.Hep-G2 120 bp overlap
ChIP Hep-G2 ENCSR000DLS.CTCF.Hep-G2 79 bp overlap
ChIP IMR-90_Ctrl GSE125639.CTCF.IMR-90_Ctrl 193 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 228 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 239 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 223 bp overlap
ChIP K-562 GSE70482.CTCF.K-562 200 bp overlap
ChIP K-562 ENCSR000DWE.CTCF.K-562 125 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 158 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 149 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 140 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 142 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 105 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 118 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 167 bp overlap
ChIP K-562_15923 GSE131349.CTCF.K-562_15923 97 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 114 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 112 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 439 bp overlap
ChIP K-562_MonoN GSE137216.CTCF.K-562_MonoN 180 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 348 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.CTCF.K-562_dCas9-KRAB 243 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.CTCF.K-562_dCas9-LSD1 242 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.CTCF.K-562_enCRISPRi-KL 301 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 250 bp overlap
ChIP K-562_sgGal4 GSE132212.CTCF.K-562_sgGal4 201 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF111MGE 245 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP K562 ENCFF430KTH 425 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 167 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 174 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 160 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 91 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 110 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 120 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 215 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 191 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 148 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 165 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 116 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 114 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 166 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 270 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 136 bp overlap
ChIP adrenal gland ENCFF678WUB 311 bp overlap
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 225 bp overlap
ChIP adrenal-gland ENCSR770IWO.CTCF.adrenal-gland 270 bp overlap
ChIP brain ENCFF163BBN 546 bp overlap
ChIP brain ENCFF163BBN 591 bp overlap
ChIP brain ENCFF163BBN 557 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 281 bp overlap
ChIP chondrocyte ENCFF134ORZ 369 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 114 bp overlap
ChIP endodermal cell ENCFF471YCZ 320 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 147 bp overlap
ChIP fibroblast of lung ENCFF084DUH 317 bp overlap
ChIP fibroblast of lung ENCFF356FDN 317 bp overlap
ChIP fibroblast_LUNG ENCSR000DWY.CTCF.fibroblast_LUNG 228 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 225 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 245 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 162 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 592 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 411 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 475 bp overlap
ChIP heart left ventricle ENCFF548XHH 381 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 233 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 188 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 126 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 152 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 185 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 213 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 192 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 140 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 216 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 244 bp overlap
ChIP islet ERP004003.CTCF.islet 164 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 189 bp overlap
ChIP lung_left_upper-lobe ENCSR027FSZ.CTCF.lung_left_upper-lobe 185 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 223 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 212 bp overlap
ChIP neural progenitor cell ENCFF420RBO 205 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 290 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 157 bp overlap
ChIP osteocyte ENCFF929FPD 457 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 437 bp overlap
ChIP smooth muscle cell ENCFF656FBT 357 bp overlap
ChIP smooth muscle cell ENCFF656FBT 357 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 264 bp overlap
ChIP testis ENCFF409BGH 291 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 257 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 316 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 211 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 491 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 111 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCFL.Kelly_shLUC-res 129 bp overlap
Dmrt1 3 datasets
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_48h DE_48h-Dmrt1_MA1603.2 9 bp overlap
Motif DE_60h DE_60h-Dmrt1_MA1603.2 9 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXJ2::ELF1 1 dataset
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap
GATA1 2 datasets
ChIP K-562 GSE107726.GATA1.K-562 237 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 161 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 296 bp overlap
ChIP foregut GSE117136.GATA4.foregut 286 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-2 304 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 276 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 291 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 285 bp overlap
HSF1 1 dataset
ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 227 bp overlap
KLF11 4 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif DE_36h DE_36h-KLF11_MA1512.2 10 bp overlap
Motif DE_48h DE_48h-KLF11_MA1512.2 10 bp overlap
Motif DE_60h DE_60h-KLF11_MA1512.2 10 bp overlap
KLF16 4 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
Motif DE_60h DE_60h-KLF16_MA0741.1 11 bp overlap
KLF9 4 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
MED1 3 datasets
ChIP hMSC-TERT4_adipocyte-D14 GSE113253.MED1.hMSC-TERT4_adipocyte-D14 236 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 210 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 207 bp overlap
NHLH1 2 datasets
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Motif DE_36h DE_36h-NHLH1_MA0048.3 9 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Nr1h3::Rxra 3 datasets
Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_36h DE_36h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_48h DE_48h-Nr1h3Rxra_MA0494.2 16 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF725QFT 361 bp overlap
PRDM1 3 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif DE_60h DE_60h-PRDM1_MA0508.4 7 bp overlap
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 171 bp overlap
RAD21 19 datasets
ChIP H1 ENCFF698EWO 116 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 350 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 182 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 355 bp overlap
ChIP HCT-116 ENCSR000BSB.RAD21.HCT-116 182 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 211 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 157 bp overlap
ChIP K562 ENCFF634XYR 365 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 220 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 237 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 175 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 197 bp overlap
ChIP hiPSC_IIA11 GSE106870.RAD21.hiPSC_IIA11 158 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 239 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 175 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 213 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 223 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 199 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 103 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 181 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 85 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 155 bp overlap
SMC3 1 dataset
ChIP hESC_D0 GSE116862.SMC3.hESC_D0 294 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SP3 4 datasets
Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap
Motif DE_36h DE_36h-SP3_MA0746.3 11 bp overlap
Motif DE_48h DE_48h-SP3_MA0746.3 11 bp overlap
Motif DE_60h DE_60h-SP3_MA0746.3 11 bp overlap
SP8 4 datasets
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
Motif DE_36h DE_36h-SP8_MA0747.2 11 bp overlap
Motif DE_48h DE_48h-SP8_MA0747.2 11 bp overlap
Motif DE_60h DE_60h-SP8_MA0747.2 11 bp overlap
SP9 4 datasets
Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap
Motif DE_36h DE_36h-SP9_MA1564.2 10 bp overlap
Motif DE_48h DE_48h-SP9_MA1564.2 10 bp overlap
Motif DE_60h DE_60h-SP9_MA1564.2 10 bp overlap
THRA 3 datasets
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Motif DE_36h DE_36h-THRA_MA1969.2 18 bp overlap
Motif DE_48h DE_48h-THRA_MA1969.2 18 bp overlap
THRB 3 datasets
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
Motif DE_36h DE_36h-THRB_MA1576.2 18 bp overlap
Motif DE_48h DE_48h-THRB_MA1576.2 18 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 170 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 296 bp overlap
ZNF343 1 dataset
Motif DE_12h DE_12h-ZNF343_MA1711.2 16 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 146 bp overlap
ZNF707 4 datasets
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
Motif DE_36h DE_36h-ZNF707_MA1715.1 15 bp overlap
Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap
Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
ZSCAN21 1 dataset
Motif DE_12h DE_12h-ZSCAN21_MA2336.1 7 bp overlap
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