chr4 : 109,848,028 109,848,349
321 bp 25 TFs 1 linked gene
This 321 bp open chromatin element is linked to LRIT3 and is bound by 25 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LRIT3 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:109,843,028 – 109,853,349
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
25 transcription factors
Source
Cell type
AR 2 datasets
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 133 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 160 bp overlap
ASH2L 1 dataset
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 131 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 223 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 127 bp overlap
ChIP K562 ENCFF485TBL 247 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 225 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 321 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 321 bp overlap
CTCF 3 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 110 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 277 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 321 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF680YXW 145 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 107 bp overlap
EZH2 1 dataset
ChIP K562 ENCFF494QJK 321 bp overlap
FOXA1 2 datasets
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 159 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 187 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 321 bp overlap
ChIP DE DE-FOXA2-2 321 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 290 bp overlap
ChIP DE DE-GATA4-2 308 bp overlap
ChIP foregut GSE117136.GATA4.foregut 278 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 321 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 184 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 283 bp overlap
ChIP DE DE-GATA6-2 307 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 249 bp overlap
MEF2D 2 datasets
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 231 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 169 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 283 bp overlap
ONECUT1 3 datasets
ChIP H9 ERP004206.ONECUT1.H9 119 bp overlap
ChIP liver ERP002306.ONECUT1.liver 204 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 232 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 321 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 321 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 289 bp overlap
RNF2 3 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 321 bp overlap
ChIP K-562 ENCSR076YPO.RNF2.K-562 316 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 321 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 290 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 237 bp overlap
SMARCA4 2 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 315 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 94 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 153 bp overlap
ZFP36 2 datasets
ChIP K-562 ENCSR776CYN.ZFP36.K-562 63 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 163 bp overlap