chr4 : 106,875,388 – 106,875,710
322 bp 49 TFs 0 linked genes
This 322 bp open chromatin element has no linked target genes and is bound by 49 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:106,870,388 – 106,880,710
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
49 transcription factors
Source
Cell type
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CTCF 59 datasets
ChIP 22Rv1 ENCFF466OXN 322 bp overlap
ChIP A549 ENCFF034FVO 280 bp overlap
ChIP BE2C ENCFF757SRF 288 bp overlap
ChIP C4-2B ENCFF821XVN 322 bp overlap
ChIP C4-2B ENCFF821XVN 322 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_24h DE_24h-CTCF_MA0139.2 15 bp overlap
ChIP DOHH2 ENCFF637WNW 322 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
ChIP GM06990 ENCFF471OQT 285 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 140 bp overlap
ChIP GM12872 ENCFF697BYI 277 bp overlap
ChIP GM12873 ENCFF711LOS 279 bp overlap
ChIP GM12874 ENCFF942MTD 241 bp overlap
ChIP GM23338 ENCFF531QOI 263 bp overlap
ChIP GM23338 ENCFF772DML 188 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 273 bp overlap
ChIP H9 ENCFF152GTF 305 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 203 bp overlap
ChIP HCT116 ENCFF003KHP 322 bp overlap
ChIP HCT116 ENCFF209YMI 273 bp overlap
ChIP HEK293 ENCFF498RMM 261 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 118 bp overlap
ChIP HFF-Myc ENCFF680WYR 286 bp overlap
ChIP HFFc6 ENCFF005CJI 322 bp overlap
ChIP HFFc6 ENCFF005CJI 252 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 164 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 154 bp overlap
ChIP HepG2 ENCFF127KUP 231 bp overlap
ChIP HepG2 ENCFF194VBQ 294 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF668CTD 145 bp overlap
ChIP HepG2 ENCFF757EKU 302 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 178 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 269 bp overlap
ChIP Loucy ENCFF359TVQ 322 bp overlap
ChIP MCF-7 ENCFF139NQI 259 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7 ENCFF954TUV 205 bp overlap
ChIP OCI-LY1 ENCFF455ESK 123 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 322 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 252 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 100 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP WTC11 ENCFF658QVH 322 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 269 bp overlap
ChIP chondrocyte ENCFF134ORZ 322 bp overlap
ChIP endodermal cell ENCFF471YCZ 297 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 322 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 208 bp overlap
ChIP neural progenitor cell ENCFF420RBO 189 bp overlap
ChIP neural progenitor cell ENCFF581WPG 322 bp overlap
ChIP retinal pigment epithelial cell ENCFF810AAG 256 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msgn1 1 dataset
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Plagl1 3 datasets
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
Motif ES_0h ES_0h-Plagl1_MA1615.2 8 bp overlap
Pparg::Rxra 1 dataset
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RAD21 4 datasets
ChIP H1 ENCFF698EWO 82 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HepG2 ENCFF360ZSW 217 bp overlap
ChIP HepG2 ENCFF906QIS 225 bp overlap
RARA 3 datasets
Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap
Motif DE_24h DE_24h-RARA_MA0730.1 17 bp overlap
Motif ES_0h ES_0h-RARA_MA0730.1 17 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RBPJ 3 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
REL 3 datasets
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
Motif DE_24h DE_24h-REL_MA0101.1 10 bp overlap
Motif ES_0h ES_0h-REL_MA0101.1 10 bp overlap
RUNX3 3 datasets
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
Motif DE_24h DE_24h-RUNX3_MA0684.3 8 bp overlap
Motif ES_0h ES_0h-RUNX3_MA0684.3 8 bp overlap
Rarb 3 datasets
Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap
Motif DE_24h DE_24h-Rarb_MA0858.1 17 bp overlap
Motif ES_0h ES_0h-Rarb_MA0858.1 17 bp overlap
STAG1 1 dataset
ChIP HepG2 ENCFF843EBZ 301 bp overlap
TFAP2A 3 datasets
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
Motif DE_24h DE_24h-TFAP2A_MA0872.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 3 datasets
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
Motif DE_24h DE_24h-TFAP2B_MA0813.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
Motif DE_24h DE_24h-TFAP2C_MA0815.1 13 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0815.1 13 bp overlap
ZIM3 3 datasets
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
Motif DE_24h DE_24h-ZIM3_MA1709.2 11 bp overlap
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_24h DE_24h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF574 1 dataset
ChIP HepG2 ENCFF206MMY 322 bp overlap
Zfp809 3 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Znf423 3 datasets
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap
Motif DE_24h DE_24h-Znf423_MA0116.1 15 bp overlap
Motif ES_0h ES_0h-Znf423_MA0116.1 15 bp overlap
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