chr4 : 55,159,839 55,160,046
207 bp 28 TFs 1 linked gene
This 207 bp open chromatin element is linked to ENSG00000287060 and is bound by 28 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ENSG00000287060 2.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:55,154,839 – 55,165,046
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
28 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 207 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 149 bp overlap
FLI1 1 dataset
ChIP SEM GSE117864.FLI1.SEM 129 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 163 bp overlap
FOXL2 2 datasets
ChIP KGN_1512 GSE138496.FOXL2.KGN_1512 163 bp overlap
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 207 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 204 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 207 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 207 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 207 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 207 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 207 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 207 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 207 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 95 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 207 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 207 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 207 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 193 bp overlap
MYB 1 dataset
ChIP SEM GSE117864.MYB.SEM 207 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 127 bp overlap
NR3C1 1 dataset
ChIP NALM-6_CASP1 GSE67046.NR3C1.NALM-6_CASP1 207 bp overlap
PAX5 2 datasets
ChIP NALM-6 GSE115764.PAX5.NALM-6 207 bp overlap
ChIP NALM-6 GSE126300.PAX5.NALM-6 207 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 207 bp overlap
POU2F2 1 dataset
ChIP pre-B-cell GSE107886.POU2F2.pre-B-cell 192 bp overlap
RELA 17 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 198 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 68 bp overlap
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 80 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 68 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 129 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 113 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 60 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 107 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 122 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 83 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 77 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 86 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 70 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 207 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 107 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 142 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 78 bp overlap
RUNX1 2 datasets
ChIP 697 GSE138031.RUNX1.697 171 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 207 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 207 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 207 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 207 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 207 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 207 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 207 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 207 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 207 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 207 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 148 bp overlap
TCF3 2 datasets
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 207 bp overlap
ChIP SEM GSE85988.TCF3.SEM 165 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 93 bp overlap