chr4 : 42,605,279 42,605,750
471 bp 34 TFs 0 linked genes
This 471 bp open chromatin element has no linked target genes and is bound by 34 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:42,600,279 – 42,610,750
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
34 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate GSE56288.AR.prostate 222 bp overlap
ChIP prostate_P27 GSE130408.AR.prostate_P27 233 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 239 bp overlap
Arid3a 1 dataset
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
CEBPA 2 datasets
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 144 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 191 bp overlap
DUX4 1 dataset
Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap
DUXA 1 dataset
Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 137 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 260 bp overlap
FOXD2 1 dataset
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 383 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 455 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 402 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 265 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 471 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 419 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 91 bp overlap
ChIP HepG2 ENCFF854JLR 159 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 297 bp overlap
Lhx3 1 dataset
Motif DE_36h DE_36h-Lhx3_MA0135.2 12 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 165 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 333 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 179 bp overlap
NR3C1 1 dataset
ChIP NALM-6 GSE67046.NR3C1.NALM-6 281 bp overlap
NR5A1 1 dataset
Motif DE_36h DE_36h-NR5A1_MA1540.3 12 bp overlap
PGR 1 dataset
Motif DE_36h DE_36h-PGR_MA2327.1 9 bp overlap
PHOX2A 1 dataset
Motif DE_36h DE_36h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_36h DE_36h-PHOX2B_MA0681.3 12 bp overlap
PROP1 1 dataset
Motif DE_36h DE_36h-PROP1_MA0715.1 11 bp overlap
Pgr 1 dataset
Motif DE_36h DE_36h-Pgr_MA2323.1 17 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 263 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 355 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 252 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 290 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 372 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 314 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 299 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 272 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 276 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 174 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 112 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 212 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 268 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 277 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 277 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 325 bp overlap
ZNF214 1 dataset
Motif DE_36h DE_36h-ZNF214_MA1975.2 13 bp overlap