chr1 : 69,738,536 69,739,180
644 bp 29 TFs 0 linked genes
This 644 bp open chromatin element has no linked target genes and is bound by 29 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:69,733,536 – 69,744,180
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
29 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 644 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 425 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 205 bp overlap
BRD4 1 dataset
ChIP CHL-1 GSE95585.BRD4.CHL-1 200 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 307 bp overlap
CTCF 3 datasets
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 144 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 381 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 243 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 173 bp overlap
EZH2 1 dataset
ChIP HCT-116 ENCSR046HGP.EZH2.HCT-116 167 bp overlap
FLI1 2 datasets
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 258 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 335 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 177 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 344 bp overlap
ChIP DE DE-FOXA2-2 275 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 222 bp overlap
FOXF1 1 dataset
ChIP GIST48 GSE106624.FOXF1.GIST48 200 bp overlap
GATA2 2 datasets
ChIP ESF GSE108408.GATA2.ESF 172 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 151 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 405 bp overlap
ChIP DE DE-GATA4-2 464 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 489 bp overlap
ChIP foregut GSE117136.GATA4.foregut 284 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 644 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 574 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 332 bp overlap
ChIP DE DE-GATA6-2 644 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 329 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 343 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 515 bp overlap
ChIP H9 ERP004206.GATA6.H9 314 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 366 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 312 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 322 bp overlap
ChIP foregut GSE117136.GATA6.foregut 161 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 505 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 516 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 637 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 304 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 457 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 479 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 215 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 54 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 96 bp overlap
RFX1 6 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 290 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 244 bp overlap
ChIP K562 ENCFF421AVO 334 bp overlap
ChIP K562 ENCFF809XVG 327 bp overlap
ChIP MCF-7 ENCFF973QAD 159 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 237 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 384 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 280 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 286 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 469 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 389 bp overlap
SMARCA2 3 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 208 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 376 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 76 bp overlap
SMARCA4 4 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 267 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 206 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 175 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 92 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 359 bp overlap
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 189 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 644 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 232 bp overlap
ZBTB24 2 datasets
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 124 bp overlap
ChIP HCT-116 GSE111683.ZBTB24.HCT-116 166 bp overlap
ZNF573 1 dataset
ChIP HEK293T GSE78099.ZNF573.HEK293T 185 bp overlap