chr3 : 181,723,544 181,723,817
273 bp 25 TFs 1 linked gene
This 273 bp open chromatin element is linked to SOX2-OT and is bound by 25 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SOX2-OT 3.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:181,718,544 – 181,728,817
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
25 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 273 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 145 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 207 bp overlap
CTCF 18 datasets
ChIP GM23338 ENCFF772DML 176 bp overlap
ChIP H1 ENCFF414GZI 201 bp overlap
ChIP H1 ENCFF764RHO 223 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 155 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 126 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 145 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 273 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 273 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 273 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 273 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 172 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF767LNC 273 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF841TWE 237 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF841TWE 273 bp overlap
ChIP endodermal cell ENCFF471YCZ 273 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 127 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 273 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 210 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 121 bp overlap
ESR1 2 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 99 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 273 bp overlap
EZH2 10 datasets
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 266 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 108 bp overlap
ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 273 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 133 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 115 bp overlap
ChIP keratinocyte ENCFF070STK 273 bp overlap
ChIP keratinocyte ENCFF070STK 122 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 93 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 104 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 71 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 237 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 172 bp overlap
MYC 1 dataset
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 100 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 273 bp overlap
POLR2A 1 dataset
ChIP esophagus squamous epithelium ENCFF708IOX 273 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 273 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 197 bp overlap
ChIP H1 ENCFF967OJF 212 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 169 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 173 bp overlap
RNF2 1 dataset
ChIP WA01 ENCSR784VUY.RNF2.WA01 273 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 62 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 249 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 114 bp overlap
SUZ12 4 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 273 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 208 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 71 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 127 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 241 bp overlap
ChIP H1 ENCFF778PAX 145 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 273 bp overlap
ZKSCAN8 1 dataset
ChIP WTC11 ENCFF666HNJ 258 bp overlap