chr3 : 150,972,720 150,973,093
373 bp 24 TFs 1 linked gene
This 373 bp open chromatin element is linked to CLRN1 and is bound by 24 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CLRN1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:150,967,720 – 150,978,093
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
24 transcription factors
Source
Cell type
AR 1 dataset
ChIP myofibroblast GSE90772.AR.myofibroblast 250 bp overlap
BRD4 2 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 103 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 198 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 171 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 373 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 203 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF844FIP 162 bp overlap
ESR1 1 dataset
ChIP VCaP_E2_ERA GSE43985.ESR1.VCaP_E2_ERA 130 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA4 3 datasets
ChIP foregut GSE117136.GATA4.foregut 185 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 299 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 373 bp overlap
GATA6 3 datasets
ChIP DE_D2 S55-DE-d2-GATA6-exp2 217 bp overlap
ChIP foregut GSE117136.GATA6.foregut 290 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 310 bp overlap
HNF4A 2 datasets
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 125 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 132 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 274 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 152 bp overlap
PAX3-FOXO1 2 datasets
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 124 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 190 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 297 bp overlap
POLR2A 1 dataset
ChIP adrenal gland ENCFF843OBJ 155 bp overlap
RAD21 1 dataset
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 343 bp overlap
REST 42 datasets
ChIP GM12878 ENCSR000BQS.REST.GM12878 182 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 92 bp overlap
ChIP GM23338 ENCFF024TCL 214 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 170 bp overlap
ChIP H1 ENCFF203SWY 328 bp overlap
ChIP H1 ENCFF429RUE 166 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 156 bp overlap
ChIP HEK293 ENCFF073DOT 314 bp overlap
ChIP HEK293 ENCFF073DOT 291 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 294 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 115 bp overlap
ChIP HeLa-S3 ENCFF911DTC 238 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 204 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 212 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 153 bp overlap
ChIP HepG2 ENCFF122AWR 246 bp overlap
ChIP Ishikawa ENCFF456OHV 129 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 221 bp overlap
ChIP K-562 ENCSR137ZMQ.REST.K-562 373 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 264 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 172 bp overlap
ChIP K562 ENCFF430APM 205 bp overlap
ChIP K562 ENCFF688UKW 160 bp overlap
ChIP K562 ENCFF758CZL 373 bp overlap
ChIP LNCaP GSE119385.REST.LNCaP 320 bp overlap
ChIP MCF-7 ENCFF893RRD 251 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 174 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 146 bp overlap
ChIP PFSK-1 ENCFF845VHA 241 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 183 bp overlap
ChIP Panc1 ENCFF518EEQ 311 bp overlap
ChIP SK-N-SH ENCFF635KBN 213 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 220 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 239 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 302 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 373 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 238 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 239 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 186 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 164 bp overlap
ChIP hiPSC_IIA11 GSE106870.REST.hiPSC_IIA11 222 bp overlap
ChIP liver ENCSR893QWP.REST.liver 177 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 97 bp overlap
SIX2 1 dataset
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 215 bp overlap
SUZ12 1 dataset
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 84 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 127 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 57 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 172 bp overlap